JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCBP2L_chrX_107772733_107800829	1/1	a0001	153	291	63	47	138	13	28	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	a0002	153	11	10	1	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	a0003	98	1	1	0	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2_chr3_196930406_196947528	1/1	a0001	156	420	94	76	188	18	42	copy fasta	NCBP2	chr3	196930406	196947528
NCBP3_chr17_3797158_3851246	1/1	a0001	620	326	77	75	121	14	37	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	a0002	620	42	13	0	28	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	a0003	456	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	a0004	620	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCCRP1_chr19_39191964_39206884	1/1	a0001	275	377	88	77	154	14	42	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	a0002	275	2	0	0	0	2	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	a0003	275	1	0	1	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCDN_chr1_35552799_35571779	1/1	a0001	729	389	96	62	171	16	42	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	a0002	729	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCEH1_chr3_172625249_172716067	1/1	a0001	408	291	69	49	110	17	44	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	a0002	408	40	18	3	14	1	4	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	a0003	408	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCF1_chr7_74769011_74794315	1/1	a0001	390	203	45	39	79	10	28	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0002	390	65	29	17	16	0	3	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0003	390	32	1	0	28	2	1	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0004	390	13	3	3	7	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0005	390	3	3	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0006	390	3	3	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0007	390	3	0	0	3	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0008	390	3	0	0	3	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0009	390	2	1	1	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0010	390	1	1	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0011	390	1	0	0	1	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	a0012	390	1	0	0	1	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF2_chr1_183550562_183595459	1/1	a0001	526	187	64	26	63	11	21	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0002	526	184	24	46	91	4	19	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0003	526	10	1	2	7	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0004	526	9	0	0	9	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0005	526	7	7	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0006	526	3	0	1	0	2	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0007	526	2	0	1	0	1	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0008	526	1	1	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0009	526	1	0	0	0	0	1	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0010	526	1	0	0	0	0	1	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	a0011	526	1	1	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF4_chr22_36856006_36883015	1/1	a0001	339	429	91	81	188	18	49	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	a0002	339	2	0	1	1	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	a0003	339	1	1	0	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	a0004	339	1	0	0	0	0	1	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	a0005	339	1	0	0	1	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCK1_chr3_136857208_136956606	1/1	a0001	377	220	59	41	71	11	36	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	a0002	377	7	7	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	a0003	377	3	0	3	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	a0004	377	1	0	0	1	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	a0005	377	1	0	0	0	1	0	copy fasta	NCK1	chr3	136857208	136956606
NCK2_chr2_105739912_105899272	1/0	a0001	380	328	72	60	147	12	36	copy fasta	NCK2	chr2	105739912	105899272