JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCKIPSD_chr3_48668844_48690915	1/1	a0001	722	301	89	54	105	15	36	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0002	722	1	1	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0003	722	1	0	1	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0004	722	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0005	722	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0006	722	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0007	722	1	0	0	0	1	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0008	722	1	0	1	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0009	722	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	a0010	722	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCLN_chr19_3180930_3214575	1/0	a0001	563	303	79	62	110	17	34	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/1	a0002	563	96	13	12	59	1	10	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	a0003	172	4	1	0	3	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	a0004	563	3	3	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	a0005	563	2	0	0	2	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	a0006	563	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	a0007	563	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCL_chr2_231448531_231469484	1/1	a0001	710	373	85	63	173	13	37	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0002	709	71	2	13	43	3	10	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0003	710	5	5	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0004	709	4	4	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0005	709	3	0	0	3	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0006	710	3	0	0	3	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0007	710	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0008	705	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	a0009	710	1	0	0	0	0	1	copy fasta	NCL	chr2	231448531	231469484
NCMAP_chr1_24551087_24614328	1/1	a0001	102	378	72	72	170	18	44	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	a0002	102	23	21	2	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	a0003	102	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCOA1_chr2_24486254_24775702	1/1	a0001	1441	311	68	56	143	14	28	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	a0002	1441	1	0	1	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	a0003	1332	1	0	0	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	a0004	1441	1	0	1	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA2_chr8_70104782_70408808	1/1	a0001	1464	270	77	35	124	4	28	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0002	1464	38	2	4	27	0	5	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0003	1464	3	3	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0004	1464	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0005	1464	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0006	1464	1	0	0	0	0	1	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0007	1464	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0008	1464	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0009	1464	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0010	1464	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0011	1464	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0012	1464	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0013	1464	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	a0014	1464	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA3_chr20_47496887_47661872	1/0	a0001	1424	171	42	29	70	6	23	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0002	1423	69	23	15	24	4	3	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/1	a0003	1421	29	1	5	12	4	6	copy fasta	NCOA3	chr20	47496887	47661872