JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCOA3_chr20_47496887_47661872	0/0	a0004	1423	10	0	5	5	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0005	1424	9	4	3	0	2	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0006	1425	9	2	3	1	0	3	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0007	1423	5	4	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0008	1426	4	2	0	2	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0009	1424	2	2	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0010	1424	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0011	1424	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0012	1425	1	0	0	0	0	1	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0013	1421	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0014	1423	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0015	1425	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0016	1424	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	a0017	1424	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA4_chr10_46000088_46035623	1/1	a0001	614	397	85	67	187	16	40	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0002	614	4	0	1	2	0	1	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0003	614	3	3	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0004	620	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0005	614	1	0	1	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0006	614	1	0	1	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0007	614	1	0	0	0	0	1	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0008	614	1	1	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0009	614	1	1	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0010	614	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	a0011	614	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA5_chr20_46055991_46094962	1/1	a0001	579	380	89	62	165	18	44	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	a0002	579	1	1	0	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	a0003	579	1	0	0	1	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA6_chr20_34709774_34830651	1/1	a0001	2063	262	58	54	103	13	32	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0002	2063	17	15	2	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0003	2063	2	0	0	2	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0004	2061	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0005	2063	1	0	0	0	1	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0006	2063	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0007	2063	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0008	2063	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0009	2063	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0010	2063	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0011	2063	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	a0012	2063	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA7_chr6_125785960_125937034	0/0	a0001	942	127	25	28	54	7	13	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	1/1	a0002	942	88	22	15	30	7	12	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	a0003	942	47	19	3	19	2	4	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	a0004	942	3	1	0	2	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	a0005	942	2	0	2	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	a0006	16	1	0	0	0	0	1	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	a0007	942	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	a0008	942	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOR1_chr17_16024157_16220534	1/1	a0001	2440	276	91	58	92	10	23	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	a0002	2440	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534