JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCOR2_chr12_124319415_124572612	0/0	a0046	2519	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0047	2519	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0048	2519	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0049	2520	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0050	2520	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0051	2520	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0052	2521	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0053	2521	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0054	2519	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0055	2518	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0056	2517	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	a0057	2518	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCR1_chr19_54901148_54918073	0/0	a0001	304	317	93	67	109	13	35	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/1	a0002	304	111	2	11	79	3	15	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	a0003	303	26	0	4	22	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	a0004	304	2	2	0	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	a0005	304	1	1	0	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR2_chr6_41330608_41355889	0/0	a0001	276	203	7	53	98	13	32	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	1/1	a0002	276	90	41	11	26	0	10	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0003	276	70	5	4	57	2	2	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0004	276	22	20	2	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0005	276	12	4	4	0	2	2	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0006	276	11	7	0	2	1	1	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0007	276	8	4	2	2	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0008	276	6	6	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0009	276	5	1	1	2	0	1	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0010	276	4	0	0	4	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0011	276	2	0	0	2	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0012	276	2	2	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0013	276	1	0	1	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0014	276	1	0	0	1	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	a0015	276	1	1	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR3LG1_chr11_17346800_17382341	0/0	a0000	0	20	0	14	2	2	2	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	1/0	a0001	454	230	44	40	112	10	23	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0002	454	99	32	16	35	2	14	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/1	a0003	454	13	3	4	3	0	2	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0004	454	3	3	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0005	454	3	0	0	3	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0006	454	3	3	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0007	454	2	0	2	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0008	454	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0009	454	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0010	454	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0011	454	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0012	454	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0013	454	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	a0014	454	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3_chr6_31583895_31598006	0/1	a0001	201	414	76	70	206	17	44	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	a0002	201	17	10	5	0	1	1	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	a0003	201	5	0	0	4	0	1	copy fasta	NCR3	chr6	31583895	31598006