JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCR3_chr6_31583895_31598006	0/0	a0004	201	3	0	3	0	0	0	copy fasta	NCR3	chr6	31583895	31598006
NCS1_chr9_130167404_130242303	1/1	a0001	190	348	90	80	114	16	46	copy fasta	NCS1	chr9	130167404	130242303
NCSTN_chr1_160338383_160363949	1/1	a0001	709	440	88	78	212	16	44	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	a0002	709	3	3	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	a0003	709	1	1	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	a0004	709	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	a0005	709	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	a0006	709	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	a0007	651	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NDC1_chr1_53760478_53843296	1/1	a0001	674	188	72	25	56	6	27	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	a0002	674	5	5	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	a0003	66	1	0	0	0	0	1	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	a0004	674	1	1	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	a0005	674	1	0	1	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC80_chr18_2566557_2621635	1/0	a0001	642	297	72	47	138	12	27	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/1	a0002	642	68	17	10	21	2	17	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	a0003	642	34	3	11	16	2	2	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	a0004	642	2	0	2	0	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	a0005	642	1	0	0	1	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDE1_chr16_15645245_15731353	0/1	a0001	335	365	92	67	155	14	36	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	a0002	335	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	a0003	335	1	0	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDEL1_chr17_8430884_8473163	1/1	a0001	345	380	94	64	164	14	42	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	a0002	345	2	2	0	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDFIP1_chr5_142103779_142159440	1/1	a0001	221	386	83	73	178	16	34	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	a0002	221	6	5	1	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP2_chr13_79476155_79561077	1/1	a0001	336	248	63	41	100	13	29	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	a0002	336	16	1	7	0	3	5	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	a0003	336	16	15	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	a0004	336	4	3	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	a0005	336	2	2	0	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDNF_chr4_121030613_121077535	1/1	a0001	568	344	79	66	140	18	39	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	a0002	568	5	5	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	a0003	568	3	3	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	a0004	568	1	0	0	0	0	1	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	a0005	568	1	1	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDN_chr15_23680400_23692305	1/1	a0001	321	443	88	76	209	18	50	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	a0002	321	5	5	0	0	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	a0003	321	1	1	0	0	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	a0004	321	1	0	0	1	0	0	copy fasta	NDN	chr15	23680400	23692305
NDOR1_chr9_137200700_137224361	1/1	a0001	597	288	75	53	122	11	25	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0002	597	62	5	16	25	5	11	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0003	597	14	0	0	12	0	2	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0004	597	6	0	5	0	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0005	597	4	4	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0006	597	3	3	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0007	597	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0008	597	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0009	597	1	0	0	0	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0010	597	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361