JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NDOR1_chr9_137200700_137224361	0/0	a0011	597	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0012	597	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0013	597	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0014	597	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	a0015	597	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDP_chrX_43943776_43978390	1/1	a0001	133	326	77	63	137	13	34	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	a0002	133	5	3	2	0	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	a0003	133	1	0	0	1	0	0	copy fasta	NDP	chrX	43943776	43978390
NDRG1_chr8_133232175_133302252	1/1	a0001	394	368	91	74	146	16	39	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	a0002	394	7	5	2	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	a0003	404	1	1	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	a0004	394	1	0	0	0	0	1	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	a0005	404	1	1	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG2_chr14_21011772_21030061	0/0	a0000	0	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	1/1	a0001	371	469	93	82	230	18	44	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	a0002	371	6	6	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	a0003	371	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	a0004	371	1	0	0	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	a0005	371	1	0	0	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	a0006	371	1	1	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG3_chr20_36646771_36751090	1/1	a0001	375	298	82	66	102	8	38	copy fasta	NDRG3	chr20	36646771	36751090
NDRG4_chr16_58495143_58518619	1/1	a0001	352	423	97	69	191	18	46	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	a0002	352	1	0	0	1	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	a0003	352	1	0	1	0	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	a0004	352	1	1	0	0	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDST1_chr5_150503131_150563211	1/1	a0001	882	393	97	64	175	12	43	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	a0002	882	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	a0003	882	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	a0004	882	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	a0005	882	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	a0006	882	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST2_chr10_73796916_73816598	1/1	a0001	883	369	85	52	180	10	40	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	a0002	883	2	2	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	a0003	883	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	a0004	883	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	a0005	883	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	a0006	883	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	a0007	883	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST3_chr4_118029486_118263634	1/1	a0001	873	216	62	38	92	2	20	copy fasta	NDST3	chr4	118029486	118263634
NDST4_chr4_114822763_115118620	1/1	a0001	872	176	71	28	47	10	18	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0002	872	4	4	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0003	872	2	2	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0004	872	2	2	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0005	872	2	0	0	2	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0006	872	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0007	872	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0008	872	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	a0009	872	1	0	0	1	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDUFA10_chr2_239952372_240030342	1/1	a0001	355	364	92	69	151	12	38	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	a0002	355	42	3	9	22	4	4	copy fasta	NDUFA10	chr2	239952372	240030342