JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NDUFA10_chr2_239952372_240030342	0/0	a0003	355	4	0	0	4	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	a0004	355	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	a0005	355	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA11_chr19_5889675_5908790	1/1	a0001	141	363	93	72	138	12	46	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA11_chr19_5889675_5908790	0/0	a0002	141	1	1	0	0	0	0	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA12_chr12_94966333_95008697	1/1	a0001	145	442	90	78	208	18	46	copy fasta	NDUFA12	chr12	94966333	95008697
NDUFA13_chr19_19511225_19533198	1/1	a0001	144	378	96	63	151	18	48	copy fasta	NDUFA13	chr19	19511225	19533198
NDUFA13_chr19_19511225_19533198	0/0	a0002	107	1	0	1	0	0	0	copy fasta	NDUFA13	chr19	19511225	19533198
NDUFA13_chr19_19511225_19533198	0/0	a0003	144	1	0	0	1	0	0	copy fasta	NDUFA13	chr19	19511225	19533198
NDUFA1_chrX_119866832_119881662	1/1	a0001	70	300	76	48	136	11	27	copy fasta	NDUFA1	chrX	119866832	119881662
NDUFA2_chr5_140640285_140652630	1/1	a0001	99	404	98	56	189	16	43	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	a0002	99	1	0	0	1	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	a0003	99	1	0	0	0	0	1	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA3_chr19_54097855_54112568	0/1	a0001	84	438	98	82	199	16	42	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	a0002	84	1	0	0	1	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA4L2_chr12_57229903_57242104	1/1	a0001	87	399	100	66	171	16	44	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4L2_chr12_57229903_57242104	0/0	a0002	87	3	0	0	3	0	0	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4_chr7_10926943_10945153	1/1	a0001	81	449	95	86	218	12	36	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	a0002	81	1	1	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA5_chr7_123531997_123562818	1/1	a0001	116	414	94	66	190	18	44	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA6_chr22_42080526_42095772	0/0	a0001	128	256	40	49	132	9	26	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/1	a0002	128	143	52	31	36	7	16	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	a0003	128	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	a0004	128	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	a0005	128	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	a0006	128	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA7_chr19_8306284_8326375	0/0	a0000	0	1	0	0	1	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	1/1	a0001	113	384	90	80	157	16	39	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	a0002	113	11	0	0	11	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	a0003	113	2	2	0	0	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	a0004	113	2	2	0	0	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	a0005	113	1	0	0	0	0	1	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	a0006	113	1	0	0	1	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA8_chr9_122139058_122164779	1/1	a0001	172	420	92	72	196	12	46	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA9_chr12_4644114_4699317	1/1	a0001	377	349	84	71	144	10	38	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	a0002	377	4	0	2	0	2	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	a0003	377	4	4	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	a0004	377	3	3	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	a0005	377	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	a0006	377	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFAB1_chr16_23576014_23601316	1/1	a0001	156	358	77	62	161	16	40	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAB1_chr16_23576014_23601316	0/0	a0002	156	1	0	0	1	0	0	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAB1_chr16_23576014_23601316	0/0	a0003	156	1	1	0	0	0	0	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAF1_chr15_41382353_41407496	1/1	a0001	327	287	68	41	140	7	29	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	a0002	327	25	0	10	1	5	9	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	a0003	327	19	1	11	0	1	6	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	a0004	327	12	11	1	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	a0005	327	6	4	2	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	a0006	327	2	0	1	0	1	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	a0007	327	1	1	0	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496