JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NDUFAF1_chr15_41382353_41407496	0/0	a0008	327	1	0	0	1	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	a0009	327	1	1	0	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF2_chr5_60940205_61158026	1/1	a0001	169	266	86	52	78	14	34	copy fasta	NDUFAF2	chr5	60940205	61158026
NDUFAF3_chr3_49017121_49028495	1/1	a0001	184	272	86	52	80	14	38	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF3_chr3_49017121_49028495	0/0	a0002	184	2	0	2	0	0	0	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF4_chr6_96884315_96902891	1/1	a0001	175	440	92	80	206	12	48	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	a0002	175	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	a0003	151	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF5_chr20_13780028_13826580	1/1	a0001	345	412	87	66	193	16	48	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	a0002	345	3	3	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	a0003	345	1	0	0	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF6_chr8_95019989_95063710	1/1	a0001	333	335	92	66	134	12	29	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	a0002	333	1	0	0	0	0	1	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF7_chr2_37226658_37254160	1/1	a0001	441	379	57	63	203	18	36	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0002	441	29	27	2	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0003	441	10	0	8	2	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0004	441	8	8	0	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0005	441	1	0	1	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0006	441	1	1	0	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0007	441	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0008	441	1	1	0	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0009	441	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	a0010	441	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF8_chr17_81234318_81246310	0/0	a0000	0	1	1	0	0	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	1/1	a0001	74	286	83	64	103	10	24	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	a0002	74	1	0	0	1	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFB10_chr16_1954538_1966975	1/1	a0001	172	445	98	79	204	14	48	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	a0002	172	1	0	1	0	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB11_chrX_47137216_47149702	1/1	a0001	153	270	73	48	113	11	23	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	a0002	8	1	0	0	1	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	a0003	67	1	0	0	1	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	a0004	110	1	0	0	1	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	a0005	153	1	0	0	0	0	1	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB1_chr14_92111123_92126706	1/1	a0001	58	441	92	80	201	18	48	copy fasta	NDUFB1	chr14	92111123	92126706
NDUFB1_chr14_92111123_92126706	0/0	a0002	58	1	0	0	1	0	0	copy fasta	NDUFB1	chr14	92111123	92126706
NDUFB2_chr7_140691708_140711643	1/1	a0001	105	305	90	60	98	14	41	copy fasta	NDUFB2	chr7	140691708	140711643
NDUFB2_chr7_140691708_140711643	0/0	a0002	105	1	0	0	0	0	1	copy fasta	NDUFB2	chr7	140691708	140711643
NDUFB3_chr2_201067001_201090750	1/1	a0001	98	331	95	64	122	14	34	copy fasta	NDUFB3	chr2	201067001	201090750
NDUFB3_chr2_201067001_201090750	0/0	a0002	98	1	1	0	0	0	0	copy fasta	NDUFB3	chr2	201067001	201090750
NDUFB4_chr3_120591336_120607507	1/1	a0001	129	424	86	76	194	18	48	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB5_chr3_179599794_179632647	1/1	a0001	189	365	94	69	156	8	36	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	a0002	189	1	0	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB6_chr9_32548001_32578159	1/1	a0001	128	375	86	77	158	16	36	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	a0002	128	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	a0003	128	1	0	1	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	a0004	128	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB7_chr19_14561078_14577066	1/1	a0001	137	395	92	80	168	10	43	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	a0002	137	3	0	0	3	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	a0003	137	1	0	0	1	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	a0004	86	1	0	0	1	0	0	copy fasta	NDUFB7	chr19	14561078	14577066