Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APOB_chr2_20996429_21049073	0/0	a0073	4560	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0074	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0075	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0076	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0077	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0078	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0079	4560	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0080	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOC1_chr19_44909608_44924346	1/1	a0001	83	432	98	78	190	18	46	copy fasta	APOC1	chr19	44909608	44924346
APOC1_chr19_44909608_44924346	0/0	a0002	83	2	0	2	0	0	0	copy fasta	APOC1	chr19	44909608	44924346
APOC1_chr19_44909608_44924346	0/0	a0003	83	2	0	2	0	0	0	copy fasta	APOC1	chr19	44909608	44924346
APOC2_chr19_44941051_44954565	1/1	a0001	101	392	88	77	169	14	42	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	a0002	101	2	1	1	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	a0003	101	1	0	0	1	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	a0004	101	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	a0005	101	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	a0006	101	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC3_chr11_116824907_116838072	1/1	a0001	99	447	91	75	213	18	48	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	0/0	a0002	99	2	1	1	0	0	0	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	0/0	a0003	99	1	0	0	1	0	0	copy fasta	APOC3	chr11	116824907	116838072
APOC4_chr19_44937237_44950496	0/1	a0001	127	193	43	29	94	8	18	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	1/0	a0002	127	111	29	25	39	4	13	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	a0003	127	86	21	24	26	2	13	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	a0004	127	5	0	0	5	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	a0005	127	2	0	0	2	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	a0006	127	1	1	0	0	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOD_chr3_195563705_195588940	1/1	a0001	189	435	92	79	198	16	48	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	a0002	189	1	1	0	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	a0003	189	1	1	0	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	a0004	189	1	0	1	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOE_chr19_44900796_44914393	1/1	a0001	317	327	55	70	145	13	42	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0002	317	53	26	9	14	1	3	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0003	317	35	14	6	14	0	1	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0004	317	3	3	0	0	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0005	317	2	0	0	2	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0006	317	1	0	0	1	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0007	317	1	0	1	0	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0008	317	1	0	0	1	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	a0009	317	1	0	0	1	0	0	copy fasta	APOE	chr19	44900796	44914393
APOF_chr12_56355568_56367857	1/1	a0001	326	201	28	48	89	10	24	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0002	326	59	55	4	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0003	326	8	0	0	8	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0004	326	3	3	0	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0005	326	2	0	0	2	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0006	326	2	2	0	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0007	326	1	0	1	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0008	326	1	0	1	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	a0009	326	1	0	0	1	0	0	copy fasta	APOF	chr12	56355568	56367857
APOH_chr17_66207033_66234415	0/0	a0001	345	184	43	28	91	2	20	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	1/1	a0002	345	134	36	35	32	11	18	copy fasta	APOH	chr17	66207033	66234415