JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NDUFB7_chr19_14561078_14577066	0/0	a0005	137	1	0	0	0	0	1	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	a0006	137	1	0	0	1	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB8_chr10_100518740_100534871	1/1	a0001	186	359	92	66	141	16	42	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB8_chr10_100518740_100534871	0/0	a0002	186	3	0	0	3	0	0	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB9_chr8_124534123_124554979	1/1	a0001	179	329	86	59	128	14	40	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	a0002	179	62	11	5	40	0	6	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	a0003	179	1	1	0	0	0	0	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFC1_chr4_139284931_139307477	1/1	a0001	76	374	90	78	152	16	36	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	a0002	76	2	2	0	0	0	0	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC2_chr11_78063297_78084862	1/0	a0001	119	372	88	55	175	14	39	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/1	a0002	119	48	4	15	19	4	5	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFS1_chr2_206109817_206164444	1/1	a0001	727	332	74	63	143	11	39	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	a0002	727	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	a0003	727	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	a0004	727	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	a0005	727	1	0	0	0	1	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS2_chr1_161197367_161219395	1/0	a0001	463	376	89	60	173	14	39	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/1	a0002	463	42	2	1	34	1	3	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	a0003	463	18	1	7	4	2	4	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	a0004	463	1	0	0	0	1	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	a0005	463	1	0	0	1	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS3_chr11_47574074_47589562	1/1	a0001	264	419	86	81	190	16	44	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	a0002	264	1	0	0	1	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	a0003	264	1	0	1	0	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	a0004	55	1	0	0	1	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS4_chr5_53555639_53688338	1/1	a0001	175	375	89	73	161	12	38	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	a0002	175	2	1	1	0	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	a0003	175	1	0	0	1	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS5_chr1_39021350_39039615	1/1	a0001	106	437	98	69	202	18	48	copy fasta	NDUFS5	chr1	39021350	39039615
NDUFS5_chr1_39021350_39039615	0/0	a0002	106	1	0	1	0	0	0	copy fasta	NDUFS5	chr1	39021350	39039615
NDUFS6_chr5_1796407_1821048	1/1	a0001	124	440	94	76	202	18	48	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS6_chr5_1796407_1821048	0/0	a0002	124	4	0	0	4	0	0	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS7_chr19_1378907_1400584	1/1	a0001	213	230	52	34	116	8	18	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	a0002	213	188	40	38	72	8	30	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS8_chr11_68025681_68041644	1/1	a0001	210	407	94	74	175	16	46	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFS8_chr11_68025681_68041644	0/0	a0002	210	1	0	0	1	0	0	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFV1_chr11_67601936_67617554	1/1	a0001	464	383	90	60	176	16	39	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	a0002	464	2	2	0	0	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	a0003	464	1	0	0	1	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	a0004	464	1	0	0	0	0	1	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	a0005	464	1	0	0	1	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV2_chr18_9097699_9139341	0/1	a0001	249	258	70	50	99	13	25	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	1/0	a0002	249	107	20	22	52	3	9	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	0/0	a0003	249	2	2	0	0	0	0	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	0/0	a0004	249	1	0	0	1	0	0	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV3_chr21_42888309_42918299	1/0	a0001	473	172	27	30	91	4	19	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/1	a0002	473	142	48	23	43	11	16	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	a0003	199	30	0	5	18	1	6	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	a0004	473	1	0	0	0	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	a0005	473	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299