JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NDUFV3_chr21_42888309_42918299	0/0	a0006	473	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	a0007	456	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NEBL_chr10_20774973_20902311	1/1	a0001	1014	208	51	43	83	11	18	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0002	1014	57	28	3	21	0	5	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0003	1014	23	1	3	19	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0004	1014	21	0	0	20	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0005	1014	10	0	5	1	0	4	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0006	1014	6	6	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0007	1014	4	0	0	4	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0008	1014	2	0	0	2	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0009	1014	1	0	1	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0010	1014	1	0	1	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0011	1014	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0012	1014	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0013	1014	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0014	1014	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	a0015	1014	1	0	0	0	1	0	copy fasta	NEBL	chr10	20774973	20902311
NEB_chr2_151480339_151739476	0/0	a0001	8525	9	0	0	8	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0002	8525	8	0	2	6	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0003	8525	5	0	2	3	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0004	8525	5	3	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0005	8525	4	0	3	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0006	8525	3	0	0	3	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/1	a0007	8525	3	0	1	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0008	8525	3	2	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0009	8525	3	0	0	2	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0010	8525	3	0	1	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0011	8525	3	2	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0012	8525	2	0	0	1	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0013	8525	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0014	8525	2	0	0	1	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0015	8525	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0016	8525	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0017	8525	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0018	8525	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0019	8525	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0020	8525	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0021	8039	2	0	0	0	0	2	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0022	8525	2	0	0	1	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0023	8525	2	0	0	1	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0024	8525	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0025	8525	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0026	8525	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0027	8525	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0028	8520	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0029	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0030	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0031	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0032	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0033	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476