JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEB_chr2_151480339_151739476	0/0	a0034	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0035	8525	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0036	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0037	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0038	8525	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0039	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0040	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0041	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0042	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0043	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0044	8525	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0045	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0046	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0047	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0048	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0049	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0050	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0051	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0052	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0053	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0054	8039	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0055	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0056	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0057	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0058	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0059	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0060	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0061	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0062	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0063	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0064	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0065	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0066	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0067	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0068	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0069	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0070	8039	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0071	8039	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0072	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0073	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0074	8039	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0075	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0076	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	1/0	a0077	8525	1	0	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0078	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0079	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0080	8525	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0081	7553	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0082	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0083	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476