JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEB_chr2_151480339_151739476	0/0	a0084	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0085	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0086	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0087	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0088	8525	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0089	8039	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0090	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0091	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0092	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0093	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0094	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0095	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0096	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0097	8039	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0098	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0099	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0100	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0101	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0102	8525	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0103	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0104	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0105	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0106	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0107	8525	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0108	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0109	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0110	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0111	8525	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0112	8525	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0113	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0114	8525	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0115	8039	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0116	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0117	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0118	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0119	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0120	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0121	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0122	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0123	8525	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0124	8525	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0125	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0126	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0127	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0128	8525	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0129	8525	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0130	8520	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0131	8520	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0132	8520	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	a0133	8520	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476