JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NECTIN2_chr19_44841297_44894223	0/0	a0007	538	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0008	538	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0009	538	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0010	538	1	0	1	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0011	538	1	0	0	0	0	1	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0012	538	1	0	0	1	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN3_chr3_111066816_111142560	1/1	a0001	549	309	92	39	154	12	10	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	a0002	549	1	0	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	a0003	549	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	a0004	549	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	a0005	549	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	a0006	549	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN4_chr1_161065998_161094558	1/1	a0001	510	375	68	62	176	17	50	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	a0002	510	22	0	5	17	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	a0003	510	7	1	5	0	1	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	a0004	510	2	0	0	2	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	a0005	510	1	1	0	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	a0006	510	1	0	0	1	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NEDD1_chr12_96902257_96958780	1/1	a0001	660	394	88	72	183	14	35	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	a0002	660	2	0	0	2	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	a0003	660	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	a0004	660	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	a0005	660	1	0	0	0	0	1	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	a0006	660	1	0	0	1	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD4L_chr18_58039226_58406539	1/1	a0001	975	117	59	16	32	2	6	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	a0002	975	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4_chr15_55821922_55998612	0/0	a0001	900	205	51	47	73	14	20	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	1/1	a0002	900	130	33	27	57	2	9	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	a0003	900	5	0	0	5	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	a0004	900	1	0	0	0	0	1	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	a0005	900	1	0	0	1	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	a0006	900	1	0	0	0	0	1	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	a0007	900	1	0	0	0	0	1	copy fasta	NEDD4	chr15	55821922	55998612
NEDD8_chr14_24211857_24237367	1/1	a0001	81	418	92	68	196	14	46	copy fasta	NEDD8	chr14	24211857	24237367
NEDD9_chr6_11178298_11237668	1/1	a0001	834	379	89	72	157	18	41	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	a0002	834	7	7	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	a0003	834	6	3	2	0	0	1	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	a0004	834	2	0	0	2	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	a0005	834	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	a0006	834	1	0	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	a0007	834	1	0	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	a0008	834	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEFH_chr22_29475218_29496390	0/0	a0001	1026	296	66	54	138	11	27	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0002	1020	52	8	11	22	1	10	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0003	1020	43	8	13	9	4	9	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0004	1020	26	0	1	25	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0005	1020	6	4	2	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/1	a0006	1026	6	0	3	0	2	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0007	1026	4	1	0	2	0	1	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0008	1020	3	3	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390