JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEFH_chr22_29475218_29496390	0/0	a0009	1022	3	3	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0010	1020	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0011	1020	1	0	0	0	0	1	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0012	1026	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0013	1026	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0014	1020	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	1/0	a0015	1020	1	0	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0016	1014	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0017	562	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	a0018	1026	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFL_chr8_24945955_24961612	1/1	a0001	543	401	96	73	171	14	45	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	a0002	543	3	0	0	3	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	a0003	543	3	2	1	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	a0004	543	1	0	0	0	0	1	copy fasta	NEFL	chr8	24945955	24961612
NEFM_chr8_24908761_24924093	0/1	a0001	916	389	75	64	187	17	45	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	1/0	a0002	916	26	18	6	0	1	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0003	916	3	3	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0004	916	3	0	0	3	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0005	916	2	0	0	2	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0006	916	2	0	2	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0007	916	1	0	0	0	0	1	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0008	916	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0009	916	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0010	916	1	0	1	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	a0011	916	1	0	1	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEGR1_chr1_71390943_72287539	0/0	a0001	354	63	44	15	2	2	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	a0002	354	1	0	1	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEIL1_chr15_75342039_75362115	1/1	a0001	390	387	77	71	187	16	34	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	a0002	390	3	2	1	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	a0003	390	2	2	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	a0004	390	2	0	2	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	a0005	390	1	0	0	1	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	a0006	390	1	1	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL2_chr8_11764710_11792345	1/1	a0001	332	356	79	83	134	14	44	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0002	332	44	0	0	44	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0003	332	18	7	0	11	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0004	332	8	1	0	3	0	4	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0005	332	6	6	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0006	332	5	0	0	5	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0007	332	3	0	0	3	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0008	332	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0009	45	1	0	1	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0010	332	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0011	332	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	a0012	332	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL3_chr4_177304874_177367936	0/0	a0001	605	142	16	18	90	3	15	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0002	605	117	22	36	41	6	12	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0003	605	32	0	6	17	3	6	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0004	605	20	20	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0005	605	16	2	0	10	0	4	copy fasta	NEIL3	chr4	177304874	177367936