JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEIL3_chr4_177304874_177367936	0/0	a0006	605	13	2	3	6	1	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0007	605	9	1	0	7	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0008	605	8	4	0	0	0	4	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	1/0	a0009	605	8	1	3	2	1	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0010	605	7	6	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0011	605	6	1	2	2	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0012	605	5	0	1	2	0	2	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0013	605	3	2	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0014	605	3	2	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/1	a0015	605	3	0	2	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0016	605	2	2	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0017	605	2	0	0	2	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0018	605	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0019	605	1	0	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0020	605	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0021	605	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0022	605	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0023	605	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0024	605	1	0	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0025	605	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0026	605	1	0	0	0	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0027	605	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0028	605	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	a0029	605	1	0	0	0	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEK10_chr3_27101484_27374383	1/1	a0001	1115	146	31	24	55	12	22	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0002	1115	34	4	10	12	4	4	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0003	1115	19	18	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0004	1115	18	5	1	12	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0005	1115	3	3	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0006	1115	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0007	1115	2	0	2	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0008	1115	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0009	1115	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0010	1115	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0011	1115	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0012	675	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0013	1115	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0014	1115	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0015	1115	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	a0016	1115	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK11_chr3_131021877_131355465	0/1	a0001	645	105	13	24	46	5	16	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	1/0	a0002	645	103	36	15	36	5	10	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0003	645	69	23	9	33	0	4	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0004	645	4	4	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0005	645	2	0	2	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0006	645	1	0	1	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0007	645	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0008	645	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0009	645	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0010	645	1	0	1	0	0	0	copy fasta	NEK11	chr3	131021877	131355465