JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEK11_chr3_131021877_131355465	0/0	a0011	645	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0012	645	1	0	0	1	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0013	645	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	a0014	645	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK1_chr4_169387809_169617583	1/0	a0001	1286	191	76	31	48	9	26	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/1	a0002	1286	54	8	8	32	2	3	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0003	1286	6	1	2	0	2	1	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0004	1286	2	0	0	0	0	2	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0005	1286	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0006	1286	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0007	1286	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0008	1286	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0009	1286	1	0	1	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0010	1286	1	0	0	0	1	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	a0011	1286	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK2_chr1_211657772_211680621	1/1	a0001	445	323	77	55	142	12	35	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	a0002	445	90	12	17	51	4	6	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	a0003	445	1	0	0	1	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	a0004	445	1	1	0	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	a0005	445	1	0	0	0	0	1	copy fasta	NEK2	chr1	211657772	211680621
NEK3_chr13_52127647_52164597	0/1	a0001	299	212	65	27	91	5	23	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	1/0	a0002	506	164	16	39	84	7	17	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0003	506	8	0	8	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0004	506	5	5	0	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0005	506	3	2	1	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0006	299	1	1	0	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0007	506	1	0	0	1	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0008	506	1	0	1	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0009	506	1	1	0	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0010	299	1	0	0	0	0	1	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	a0011	506	1	0	0	0	0	1	copy fasta	NEK3	chr13	52127647	52164597
NEK4_chr3_52703444_52775940	1/1	a0001	841	199	67	39	62	10	19	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0002	841	100	9	24	57	4	6	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0003	841	10	10	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0004	841	2	0	2	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0005	841	2	0	0	0	0	2	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0006	841	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0007	841	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0008	841	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0009	841	1	0	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	a0010	841	1	0	0	0	0	1	copy fasta	NEK4	chr3	52703444	52775940
NEK5_chr13_52028611_52134073	1/1	a0001	832	292	63	53	138	6	30	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0002	832	31	1	13	10	4	3	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0003	832	3	2	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0004	832	2	1	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0005	832	1	0	0	0	0	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0006	832	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0007	832	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0008	832	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	a0009	832	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073