JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEK5_chr13_52028611_52134073	0/0	a0010	832	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK6_chr9_124252949_124358307	1/1	a0001	313	368	90	70	154	14	38	copy fasta	NEK6	chr9	124252949	124358307
NEK7_chr1_198151998_198327420	1/1	a0001	302	340	86	59	143	12	38	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	a0002	302	5	0	0	5	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	a0003	302	1	0	1	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK8_chr17_28723788_28748455	1/0	a0001	692	363	84	68	157	8	45	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	a0002	692	2	0	0	2	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/1	a0003	692	1	0	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	a0004	692	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	a0005	692	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	a0006	692	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	a0007	692	1	0	0	0	0	1	copy fasta	NEK8	chr17	28723788	28748455
NEK9_chr14_75074353_75132048	0/1	a0001	979	127	22	24	57	7	16	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	1/0	a0002	979	126	58	26	20	5	16	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	a0003	979	8	8	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	a0004	979	5	0	5	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	a0005	979	5	0	0	5	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	a0006	979	4	3	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	a0007	979	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	a0008	979	1	0	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	a0009	979	1	0	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NELFA_chr4_1977723_2013974	1/1	a0001	528	352	69	80	146	14	41	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	a0002	528	5	0	0	5	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	a0003	528	1	0	0	1	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	a0004	528	1	0	0	0	0	1	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	a0005	528	1	1	0	0	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFB_chr9_137250327_137278542	1/1	a0001	28	364	94	70	146	14	38	copy fasta	NELFB	chr9	137250327	137278542
NELFCD_chr20_58976256_59000113	1/1	a0001	581	437	94	78	197	16	50	copy fasta	NELFCD	chr20	58976256	59000113
NELFCD_chr20_58976256_59000113	0/0	a0002	581	1	0	0	1	0	0	copy fasta	NELFCD	chr20	58976256	59000113
NELFE_chr6_31947087_31963971	0/1	a0001	380	424	83	78	201	18	43	copy fasta	NELFE	chr6	31947087	31963971
NELFE_chr6_31947087_31963971	0/0	a0002	378	11	11	0	0	0	0	copy fasta	NELFE	chr6	31947087	31963971
NELFE_chr6_31947087_31963971	0/0	a0003	376	7	0	5	1	0	1	copy fasta	NELFE	chr6	31947087	31963971
NELFE_chr6_31947087_31963971	0/0	a0004	380	1	0	1	0	0	0	copy fasta	NELFE	chr6	31947087	31963971
NELFE_chr6_31947087_31963971	0/0	a0005	380	1	0	0	1	0	0	copy fasta	NELFE	chr6	31947087	31963971
NELFE_chr6_31947087_31963971	0/0	a0006	380	1	0	0	1	0	0	copy fasta	NELFE	chr6	31947087	31963971
NELL1_chr11_20664586_21580686	1/0	a0001	810	45	32	6	2	0	4	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/1	a0002	810	33	16	5	5	0	6	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0003	810	2	2	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0004	810	1	1	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0005	810	1	0	1	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0006	810	1	0	0	1	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0007	810	1	1	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0008	810	1	1	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0009	810	1	1	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0010	810	1	1	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	a0011	810	1	1	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL2_chr12_44503278_44881315	1/1	a0001	816	150	65	30	34	8	11	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	a0002	816	3	3	0	0	0	0	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	a0003	816	3	0	2	0	0	1	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	a0004	816	2	0	0	2	0	0	copy fasta	NELL2	chr12	44503278	44881315