Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APOH_chr17_66207033_66234415	0/0	a0003	345	18	0	3	13	2	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0004	345	12	9	0	1	1	1	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0005	345	9	4	0	3	0	2	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0006	345	7	0	5	0	0	2	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0007	345	7	0	6	1	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0008	345	6	0	0	6	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0009	345	3	0	0	3	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0010	345	1	1	0	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0011	345	1	0	0	0	0	1	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0012	345	1	1	0	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0013	345	1	0	0	1	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0014	344	1	0	1	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	a0015	345	1	0	0	1	0	0	copy fasta	APOH	chr17	66207033	66234415
APOL1_chr22_36248133_36272525	0/1	a0001	398	275	19	65	140	12	38	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	1/0	a0002	398	65	2	7	46	3	6	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0003	398	23	23	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0004	398	14	13	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0005	396	11	11	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0006	398	10	9	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0007	398	5	3	1	0	1	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0008	398	4	4	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0009	398	3	2	0	0	0	1	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0010	398	2	1	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0011	398	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	a0012	398	1	0	0	0	0	1	copy fasta	APOL1	chr22	36248133	36272525
APOL2_chr22_36221209_36244527	1/1	a0001	337	322	51	75	138	17	39	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	a0002	337	59	34	7	9	1	8	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	a0003	337	1	0	0	1	0	0	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	a0004	337	1	0	0	0	0	1	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	a0005	337	1	1	0	0	0	0	copy fasta	APOL2	chr22	36221209	36244527
APOL3_chr22_36135329_36165755	1/1	a0001	331	333	75	60	147	11	38	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	a0002	331	12	11	0	0	1	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	a0003	331	8	7	1	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	a0004	331	8	1	5	0	2	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	a0005	331	3	0	0	0	0	3	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	a0006	331	1	0	0	1	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	a0007	331	1	0	0	0	0	1	copy fasta	APOL3	chr22	36135329	36165755
APOL4_chr22_36184128_36206809	0/1	a0001	348	258	47	39	137	10	24	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0002	127	129	15	37	54	5	18	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0003	348	21	17	3	0	1	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0004	348	9	8	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0005	348	6	6	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0006	348	2	2	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0007	348	2	0	0	0	0	2	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0008	348	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0009	348	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0010	348	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0011	348	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	a0012	348	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	1/0	a0013	348	1	0	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809