JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEMF_chr14_49777083_49857788	0/1	a0001	1076	191	58	56	52	8	16	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	1/0	a0002	1076	28	23	0	4	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	a0003	1076	1	0	0	1	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	a0004	1076	1	0	0	1	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	a0005	1076	1	1	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMP1_chr12_57050643_57083791	1/1	a0001	444	382	80	73	174	15	38	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	a0002	444	7	0	3	0	1	3	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	a0003	444	3	3	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	a0004	444	2	2	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	a0005	444	2	2	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	a0006	444	1	1	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	a0007	440	1	0	0	0	0	1	copy fasta	NEMP1	chr12	57050643	57083791
NEMP2_chr2_190499338_190539722	1/1	a0001	417	341	83	63	151	11	31	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	a0002	417	60	6	9	37	1	7	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	a0003	417	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	a0004	417	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	a0005	417	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NENF_chr1_212427920_212451379	1/1	a0001	172	414	91	72	195	14	40	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	a0002	172	1	0	0	1	0	0	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	a0003	172	1	1	0	0	0	0	copy fasta	NENF	chr1	212427920	212451379
NEO1_chr15_73047463_73310205	1/1	a0001	1461	311	65	56	130	14	44	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	a0002	1461	7	0	0	7	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	a0003	1461	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	a0004	1461	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	a0005	1461	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	a0006	1461	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	a0007	1461	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	a0008	1461	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEPRO_chr3_112997444_113024671	0/1	a0001	567	177	16	53	71	10	26	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	1/0	a0002	567	161	46	16	82	2	14	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0003	567	75	17	0	53	1	4	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0004	567	18	14	3	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0005	567	11	0	0	11	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0006	567	3	0	0	1	0	2	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0007	567	2	2	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0008	567	2	2	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0009	567	2	1	1	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0010	567	1	0	1	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0011	567	1	0	0	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	a0012	567	1	0	0	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NES_chr1_156663763_156682407	0/0	a0001	1621	239	24	46	137	10	22	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/1	a0002	1621	93	5	31	35	7	14	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0003	1621	24	18	4	0	0	2	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0004	1621	17	16	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0005	1621	11	11	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0006	1621	9	2	2	0	1	4	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0007	1621	8	0	0	8	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0008	1621	8	7	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0009	1621	5	5	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0010	1621	3	3	0	0	0	0	copy fasta	NES	chr1	156663763	156682407