JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NES_chr1_156663763_156682407	0/0	a0011	1621	2	2	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	1/0	a0012	1621	2	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0013	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0014	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0015	1621	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0016	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0017	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0018	1621	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0019	1621	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0020	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0021	1621	1	0	0	0	0	1	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0022	1621	1	0	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0023	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0024	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0025	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0026	1621	1	0	0	0	0	1	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0027	1621	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0028	1621	1	0	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	a0029	1621	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NET1_chr10_5407557_5464056	1/1	a0001	596	346	70	55	167	14	38	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	a0002	596	19	0	1	16	0	2	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	a0003	596	6	6	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	a0004	596	6	0	5	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	a0005	596	1	0	1	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	a0006	596	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	a0007	596	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NETO1_chr18_72738756_72872987	0/1	a0001	533	329	79	63	136	14	36	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	1/0	a0002	533	8	7	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	a0003	533	5	4	1	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	a0004	533	3	0	0	3	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	a0005	533	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	a0006	533	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	a0007	533	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO2_chr16_47072703_47148945	1/1	a0001	525	160	75	30	27	6	20	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	a0002	525	7	7	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	a0003	525	1	0	0	1	0	0	copy fasta	NETO2	chr16	47072703	47148945
NEU1_chr6_31852659_31867821	0/1	a0001	415	410	83	80	182	18	46	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	a0002	415	9	9	0	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU2_chr2_233027672_233040057	1/0	a0001	380	312	63	50	155	9	34	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/1	a0002	380	72	25	23	1	8	14	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0003	380	38	5	3	29	0	1	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0004	380	25	0	2	23	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0005	380	2	2	0	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0006	380	1	0	0	1	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0007	380	1	0	0	1	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0008	380	1	0	0	0	1	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0009	380	1	1	0	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	a0010	240	1	0	0	0	0	1	copy fasta	NEU2	chr2	233027672	233040057
NEU3_chr11_74983933_75015907	1/1	a0001	461	375	93	60	167	13	40	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0002	461	7	2	2	0	2	1	copy fasta	NEU3	chr11	74983933	75015907