JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEU3_chr11_74983933_75015907	0/0	a0003	461	2	0	0	2	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0004	461	2	0	1	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0005	461	2	0	0	2	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0006	461	2	2	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0007	461	1	0	1	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0008	461	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0009	461	1	0	0	0	1	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	a0010	461	1	0	0	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU4_chr2_241804193_241822413	0/0	a0000	0	1	0	0	0	1	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/1	a0001	484	245	59	50	104	7	24	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0002	484	61	14	16	13	8	10	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0003	484	3	3	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0004	484	2	0	0	2	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0005	484	2	2	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0006	484	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0007	484	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0008	484	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0009	484	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	a0010	484	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEURL1B_chr5_172636263_172696540	1/1	a0001	555	368	92	69	154	16	35	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	a0002	555	21	0	5	13	2	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	a0003	555	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	a0004	555	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	a0005	555	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1_chr10_103488705_103597546	1/1	a0001	574	261	80	55	84	10	30	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	a0002	574	48	5	9	20	2	12	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	a0003	574	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	a0004	574	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	a0005	574	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL2_chr20_45883634_45896208	1/1	a0001	285	409	82	67	198	16	44	copy fasta	NEURL2	chr20	45883634	45896208
NEURL2_chr20_45883634_45896208	0/0	a0002	285	11	10	1	0	0	0	copy fasta	NEURL2	chr20	45883634	45896208
NEURL3_chr2_96492646_96510357	1/1	a0001	262	302	71	62	115	14	38	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0002	262	80	17	5	54	0	4	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0003	262	4	4	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0004	262	2	0	2	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0005	262	1	1	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0006	262	1	1	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0007	262	1	0	1	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0008	262	1	0	0	1	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0009	262	1	0	0	1	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	a0010	262	1	0	0	1	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL4_chr17_7310628_7334335	1/1	a0001	1562	227	84	32	87	5	17	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0002	1562	92	2	20	58	2	10	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0003	1562	58	0	19	26	1	12	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0004	1562	6	1	1	3	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0005	1562	3	0	3	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0006	1562	3	0	2	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0007	1562	2	2	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0008	1562	2	0	2	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0009	1562	1	0	0	0	1	0	copy fasta	NEURL4	chr17	7310628	7334335