JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEURL4_chr17_7310628_7334335	0/0	a0010	1562	1	0	0	0	1	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0011	1562	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0012	1562	1	0	0	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0013	1562	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0014	1562	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0015	1562	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0016	1562	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0017	1562	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0018	1562	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0019	1562	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0020	1562	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0021	1562	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0022	1562	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	a0023	1562	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEUROD1_chr2_181671467_181685517	0/0	a0001	356	296	67	54	138	9	28	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	1/1	a0002	356	76	24	20	16	7	7	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	a0003	356	3	1	0	0	0	2	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	a0004	356	2	0	2	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	a0005	4	1	0	0	1	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	a0006	356	1	0	0	0	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	a0007	356	1	0	0	1	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD2_chr17_39598768_39612920	1/1	a0001	382	358	93	76	127	16	44	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	a0002	382	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	a0003	382	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD4_chr12_55014974_55035017	1/1	a0001	331	416	93	76	190	16	39	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	a0002	331	2	0	2	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	a0003	331	2	0	0	2	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	a0004	331	1	0	0	0	0	1	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	a0005	331	1	0	1	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	a0006	331	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	a0007	331	1	0	1	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD6_chr7_31332465_31345726	1/1	a0001	337	414	92	80	176	18	46	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROG1_chr5_135529282_135540964	1/1	a0001	237	403	91	78	170	16	46	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	a0002	237	2	1	1	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	a0003	237	2	2	0	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	a0004	237	1	0	1	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG2_chr4_112508516_112521180	1/1	a0001	272	413	91	74	194	16	36	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	a0002	272	11	0	0	11	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	a0003	272	3	3	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	a0004	272	1	0	0	1	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	a0005	272	1	0	0	1	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	a0006	272	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	a0007	272	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	a0008	272	1	0	0	1	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG3_chr10_69566698_69578422	1/1	a0001	214	266	65	27	140	1	31	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	a0002	214	168	29	47	58	15	19	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	a0003	214	8	1	5	0	2	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	a0004	214	1	0	1	0	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	a0005	214	1	1	0	0	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEXMIF_chrX_74727856_74930452	1/1	a0001	1516	215	60	43	76	7	27	copy fasta	NEXMIF	chrX	74727856	74930452