JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NFASC_chr1_204865862_205027822	0/0	a0006	1189	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	a0007	1189	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	a0008	1189	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	a0009	1189	1	0	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFAT5_chr16_69560966_69709654	1/1	a0001	1549	372	92	61	166	16	35	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	a0002	1549	3	0	0	0	2	1	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	a0003	1549	3	0	0	3	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	a0004	1549	1	0	1	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	a0005	1549	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFATC1_chr18_79390930_79534323	1/1	a0001	943	191	66	31	55	5	32	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0002	943	102	15	34	38	6	9	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0003	943	17	3	11	0	3	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0004	943	3	0	0	3	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0005	943	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0006	943	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0007	943	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0008	943	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0009	943	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0010	943	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0011	943	1	0	0	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0012	943	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	a0013	943	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC2IP_chr16_28945937_28972092	1/1	a0001	419	357	68	64	175	16	32	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	a0002	419	34	17	0	9	0	8	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	a0003	419	3	0	0	3	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	a0004	419	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	a0005	419	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2_chr20_51381963_51547719	1/1	a0001	921	301	84	62	103	10	40	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0002	921	5	1	0	4	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0003	921	3	0	0	3	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0004	921	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0005	921	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0006	921	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0007	921	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0008	921	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	a0009	921	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC3_chr16_68080370_68234259	1/1	a0001	1075	175	73	33	41	4	22	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	a0002	1075	4	4	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	a0003	1075	3	3	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	a0004	1075	2	0	0	2	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	a0005	1075	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	a0006	1075	1	0	1	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	a0007	1075	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	a0008	1075	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC4_chr14_24363184_24384601	1/0	a0001	902	273	69	37	136	7	23	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	a0002	902	88	7	23	38	8	12	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/1	a0003	902	25	5	10	3	1	5	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	a0004	902	3	2	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	a0005	902	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	a0006	902	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601