JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NFATC4_chr14_24363184_24384601	0/0	a0007	902	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	a0008	902	1	1	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	a0009	902	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFE2L1_chr17_48043359_48066545	1/1	a0001	772	397	92	68	177	18	40	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	a0002	772	3	0	0	3	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L2_chr2_177225308_177269727	1/1	a0001	605	320	90	70	120	14	24	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	a0002	605	2	2	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	a0003	605	2	2	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	a0004	605	1	0	0	1	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	a0005	605	1	0	0	1	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L3_chr7_26147198_26192137	1/1	a0001	694	359	75	66	161	14	41	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0002	695	11	6	4	0	0	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0003	694	10	0	0	10	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0004	694	3	3	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0005	694	2	2	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0006	694	2	0	0	2	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0007	694	2	0	0	2	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0008	694	2	0	0	2	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0009	694	2	0	0	0	0	2	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0010	694	1	0	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0011	694	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0012	694	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0013	694	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0014	694	1	0	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0015	694	1	1	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	a0016	694	1	1	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2_chr12_54287111_54306015	1/1	a0001	373	343	95	75	119	16	36	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	a0002	373	1	0	1	0	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	a0003	373	1	1	0	0	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	a0004	373	1	0	0	1	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFIA_chr1_61077561_61467788	1/1	a0001	509	155	64	22	49	6	12	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	a0002	509	1	0	0	1	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIB_chr9_14076848_14319141	1/1	a0001	494	300	86	58	122	6	26	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	a0002	494	2	0	0	0	0	2	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	a0003	501	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	a0004	494	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIC_chr19_3361583_3474217	1/1	a0001	508	282	73	62	92	16	37	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	a0002	508	18	17	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIL3_chr9_91404045_91428832	1/1	a0001	462	443	83	77	218	18	45	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	a0002	462	3	2	1	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	a0003	462	2	0	2	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	a0004	462	2	2	0	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	a0005	462	1	0	0	0	0	1	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	a0006	462	1	0	1	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	a0007	462	1	0	1	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	a0008	462	1	1	0	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFILZ_chr19_8625633_8686151	1/0	a0001	289	221	53	39	100	7	21	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/1	a0002	289	77	9	20	32	4	11	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0003	289	38	0	10	19	3	6	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0004	289	6	6	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151