JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NFILZ_chr19_8625633_8686151	0/0	a0005	289	5	5	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0006	289	5	4	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0007	289	3	0	3	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0008	289	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0009	289	2	0	1	0	1	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0010	289	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0011	141	1	0	0	0	1	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0012	289	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0013	289	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0014	289	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	a0015	289	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFIX_chr19_12990475_13103796	1/1	a0001	502	252	80	64	62	6	38	copy fasta	NFIX	chr19	12990475	13103796
NFKB1_chr4_102496359_102622302	1/1	a0001	969	319	77	55	135	12	38	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	a0002	969	5	4	1	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	a0003	969	2	2	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	a0004	969	1	1	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	a0005	969	1	0	0	1	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB2_chr10_102390705_102407524	1/1	a0001	900	414	92	76	186	16	42	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0002	900	2	2	0	0	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0003	900	1	1	0	0	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0004	487	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0005	900	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0006	900	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0007	900	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0008	900	1	1	0	0	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0009	900	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	a0010	140	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKBIA_chr14_35396513_35409749	1/1	a0001	317	461	100	80	217	18	44	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	a0002	328	1	0	0	1	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIB_chr19_38894969_38913889	1/1	a0001	356	445	98	82	199	16	48	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	a0002	356	4	0	0	4	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	a0003	356	2	0	0	2	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	a0004	356	1	0	0	1	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	a0005	356	1	0	0	1	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	a0006	356	1	0	0	1	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIE_chr6_44253166_44270551	1/1	a0001	361	391	87	75	168	16	43	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	a0002	361	55	0	3	51	1	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	a0003	361	4	4	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	a0004	361	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	a0005	361	1	0	0	0	1	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	a0006	361	1	0	0	0	0	1	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	a0007	361	1	1	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIL1_chr6_31542608_31563829	0/0	a0000	0	1	0	0	1	0	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/1	a0001	381	442	95	83	200	17	46	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	a0002	381	3	0	3	0	0	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	a0003	381	2	1	0	0	1	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	a0004	381	1	0	0	1	0	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIZ_chr3_101844514_101866022	1/1	a0001	718	401	93	74	180	14	38	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	a0002	718	2	0	0	2	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	a0003	718	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022