JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NFKBIZ_chr3_101844514_101866022	0/0	a0004	718	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	a0005	718	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	a0006	718	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	a0007	718	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	a0008	718	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	a0009	718	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFRKB_chr11_129858636_129900578	1/1	a0001	1299	396	93	71	181	16	33	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0002	1299	3	0	0	3	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0003	1299	2	1	1	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0004	1299	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0005	1299	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0006	457	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0007	1299	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0008	1299	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0009	1299	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0010	1299	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0011	1299	1	0	0	0	0	1	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	a0012	1299	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFS1_chr20_35663052_35704352	1/1	a0001	457	265	84	44	91	14	30	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	a0002	457	3	0	0	3	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFU1_chr2_69391126_69442435	1/0	a0001	254	259	63	38	131	5	21	copy fasta	NFU1	chr2	69391126	69442435
NFU1_chr2_69391126_69442435	0/1	a0002	254	100	25	19	41	4	10	copy fasta	NFU1	chr2	69391126	69442435
NFU1_chr2_69391126_69442435	0/0	a0003	254	5	4	1	0	0	0	copy fasta	NFU1	chr2	69391126	69442435
NFU1_chr2_69391126_69442435	0/0	a0004	254	4	0	2	0	1	1	copy fasta	NFU1	chr2	69391126	69442435
NFX1_chr9_33285516_33376157	1/1	a0001	1120	282	72	50	128	10	20	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	a0002	1120	10	8	2	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	a0003	1120	4	0	0	4	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	a0004	1120	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	a0005	1120	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	a0006	1120	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	a0007	1120	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFXL1_chr4_47842240_47919583	1/0	a0001	911	205	54	51	66	11	22	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/1	a0002	911	162	30	15	93	5	18	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0003	911	3	3	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0004	911	2	0	2	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0005	911	1	0	0	1	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0006	911	1	0	0	0	0	1	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0007	911	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0008	911	1	0	0	0	0	1	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0009	911	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	a0010	911	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFYA_chr6_41067974_41107403	1/1	a0001	347	321	90	52	125	12	40	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	a0002	347	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	a0003	347	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	a0004	347	1	0	0	1	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYB_chr12_104112086_104143210	1/1	a0001	207	394	88	74	176	16	38	copy fasta	NFYB	chr12	104112086	104143210
NFYC_chr1_40686704_40776603	1/1	a0001	335	332	88	62	130	14	36	copy fasta	NFYC	chr1	40686704	40776603
NGB_chr14_77260483_77276206	1/1	a0001	151	359	86	59	162	8	42	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	a0002	151	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	a0003	110	1	0	0	0	0	1	copy fasta	NGB	chr14	77260483	77276206