JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NGB_chr14_77260483_77276206	0/0	a0004	151	1	0	1	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	a0005	151	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	a0006	151	1	0	0	1	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	a0007	151	1	0	0	0	0	1	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	a0008	151	1	0	0	1	0	0	copy fasta	NGB	chr14	77260483	77276206
NGDN_chr14_23464703_23483173	1/1	a0001	315	380	86	72	164	18	38	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	a0002	315	4	3	1	0	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	a0003	315	3	3	0	0	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	a0004	315	2	0	0	0	0	2	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	a0005	315	1	0	0	1	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	a0006	315	1	0	0	1	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	a0007	315	1	0	1	0	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGEF_chr2_232873701_233018256	0/1	a0001	710	302	83	59	118	11	30	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	1/0	a0002	710	57	10	5	28	3	10	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	a0003	710	1	0	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	a0004	710	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	a0005	710	1	0	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGFR_chr17_49490293_49520008	1/1	a0001	427	395	94	80	161	15	43	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	a0002	427	25	2	3	14	3	3	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	a0003	427	4	0	0	4	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	a0004	427	1	0	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	a0005	427	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGF_chr1_115280917_115343249	1/1	a0001	241	323	84	57	141	5	34	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0002	241	86	11	23	41	1	10	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0003	241	2	0	1	0	0	1	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0004	241	2	0	0	0	0	2	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0005	241	1	0	0	1	0	0	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0006	241	1	1	0	0	0	0	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0007	241	1	0	0	1	0	0	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0008	241	1	0	0	0	0	1	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	a0009	241	1	0	1	0	0	0	copy fasta	NGF	chr1	115280917	115343249
NGLY1_chr3_25713944_25788443	1/1	a0001	654	262	92	60	74	4	30	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	a0002	654	1	1	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	a0003	654	1	1	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGRN_chr15_90260672_90277211	1/1	a0001	291	428	89	78	205	14	40	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	a0002	291	21	0	7	6	4	4	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	a0003	291	2	1	1	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	a0004	291	2	2	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	a0005	291	1	1	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	a0006	291	1	1	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	a0007	291	1	0	0	1	0	0	copy fasta	NGRN	chr15	90260672	90277211
NHEJ1_chr2_219064357_219165815	1/1	a0001	299	334	69	51	170	8	34	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	a0002	299	12	12	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	a0003	299	3	2	1	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	a0004	299	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHERF1_chr17_74743628_74774353	1/1	a0001	358	364	85	75	139	17	46	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	a0002	358	2	2	0	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	a0003	358	1	1	0	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	a0004	358	1	0	0	0	1	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	a0005	358	1	0	1	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353