Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APOL4_chr22_36184128_36206809	0/0	a0014	348	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL5_chr22_35712872_35734483	0/1	a0001	433	169	40	27	71	10	20	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0002	433	136	12	21	84	4	15	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0003	433	51	6	18	13	3	11	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0004	433	15	13	1	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0005	433	14	10	0	0	0	4	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0006	433	5	5	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0007	83	2	2	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0008	63	1	0	1	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0009	433	1	1	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0010	207	1	0	0	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0011	433	1	0	0	0	1	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0012	433	1	0	0	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0013	433	1	0	1	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0014	433	1	1	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0015	433	1	0	0	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	a0016	433	1	0	1	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL6_chr22_35643446_35673404	1/1	a0001	343	377	83	72	165	14	41	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	a0002	343	7	6	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	a0003	343	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	a0004	343	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOLD1_chr12_12780659_12796466	1/1	a0001	248	409	98	61	191	15	42	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	a0002	248	18	0	7	9	1	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	a0003	248	1	0	0	0	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOM_chr6_31650894_31663210	0/1	a0001	188	418	92	80	179	18	48	copy fasta	APOM	chr6	31650894	31663210
APOM_chr6_31650894_31663210	0/0	a0002	188	1	0	0	1	0	0	copy fasta	APOM	chr6	31650894	31663210
APOOL_chrX_84998877_85098315	1/1	a0001	268	255	72	48	106	7	20	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	a0002	268	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOO_chrX_23828353_23912938	1/1	a0001	198	258	62	48	111	9	26	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	a0002	198	8	7	1	0	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	a0003	198	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	a0004	175	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	a0005	198	1	1	0	0	0	0	copy fasta	APOO	chrX	23828353	23912938
APPBP2_chr17_60438158_60531242	0/0	a0001	585	102	38	22	38	0	4	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	a0002	585	42	36	6	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPL1_chr3_57222729_57278471	1/0	a0001	709	235	81	47	60	11	35	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/1	a0002	709	20	0	11	0	3	5	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	a0003	709	6	6	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	a0004	709	2	2	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	a0005	709	1	0	0	1	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	a0006	709	1	0	0	1	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	a0007	709	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL2_chr12_105168300_105241174	1/1	a0001	664	294	75	56	123	10	28	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0002	664	87	13	19	44	2	9	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0003	664	2	0	0	2	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0004	664	2	2	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0005	664	1	0	1	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0006	664	1	0	0	0	0	1	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0007	664	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0008	664	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174