JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NHLRC4_chr16_562005_574495	0/0	a0002	123	3	3	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	a0003	123	1	0	1	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	a0004	123	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	a0005	123	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	a0006	123	1	0	0	1	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHP2_chr5_178144463_178158885	1/1	a0001	153	414	94	81	174	17	46	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	a0002	153	2	2	0	0	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	a0003	153	1	0	0	0	1	0	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	a0004	153	1	0	1	0	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHSL1_chr6_138417043_138504494	1/1	a0001	1606	285	67	62	120	8	26	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0002	1606	11	0	0	11	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0003	1606	9	9	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0004	1606	4	0	3	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0005	1606	4	4	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0006	1606	3	3	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0007	1606	3	3	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0008	1606	2	0	0	0	0	2	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0009	1606	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0010	1606	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0011	1606	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0012	1606	1	0	0	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0013	1606	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0014	1606	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0015	1606	1	0	0	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0016	1606	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0017	1606	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	a0018	1606	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL2_chrX_71905845_72158286	0/0	a0001	1225	134	41	17	59	5	12	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0002	1225	26	14	1	3	0	8	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0003	1225	12	0	0	12	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0004	1225	4	0	0	4	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0005	1225	4	0	4	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0006	1225	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0007	1225	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0008	1225	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0009	1225	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0010	1225	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0011	1117	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	a0012	1225	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHS_chrX_17370200_17740994	0/0	a0001	1651	73	28	12	32	0	1	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0002	1651	66	4	13	30	5	14	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0003	1651	5	0	2	3	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0004	1651	5	5	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0005	1650	4	3	1	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0006	1651	4	4	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0007	1650	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0008	1650	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0009	1651	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0010	1651	1	0	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0011	1651	1	0	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994