JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NHS_chrX_17370200_17740994	0/0	a0012	1651	1	0	1	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	a0013	1639	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NIBAN1_chr1_184786032_184979508	1/1	a0001	928	170	27	29	84	6	22	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0002	928	36	27	0	9	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0003	928	12	5	2	0	1	4	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0004	928	9	8	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0005	928	7	7	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0006	928	6	6	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0007	928	4	3	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0008	928	2	0	1	0	1	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0009	928	2	0	2	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0010	928	1	0	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0011	928	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0012	928	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0013	928	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0014	928	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0015	928	1	0	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0016	928	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	a0017	928	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN2_chr9_127500343_127574073	1/1	a0001	746	317	84	62	112	13	44	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0002	746	5	0	0	5	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0003	746	4	0	0	4	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0004	746	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0005	746	1	0	0	1	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0006	746	1	0	0	0	1	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0007	746	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0008	746	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	a0009	746	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN3_chr19_17522267_17558640	0/1	a0001	620	165	42	34	74	4	10	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0002	620	69	24	17	12	6	10	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	1/0	a0003	620	57	0	5	44	0	7	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0004	620	57	9	7	33	1	7	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0005	620	27	4	6	10	1	6	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0006	620	9	8	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0007	455	4	0	1	3	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0008	620	3	3	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0009	620	2	1	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0010	620	2	1	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0011	620	2	2	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0012	620	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0013	620	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0014	620	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0015	620	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0016	620	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0017	620	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	a0018	620	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NICN1_chr3_49417333_49434324	1/1	a0001	213	382	96	75	160	16	33	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	a0002	213	3	0	1	0	2	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	a0003	213	1	0	0	0	0	1	copy fasta	NICN1	chr3	49417333	49434324
NID1_chr1_235970830_236070090	0/0	a0001	1247	70	12	6	47	2	3	copy fasta	NID1	chr1	235970830	236070090