JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NID1_chr1_235970830_236070090	0/0	a0002	1247	58	19	10	15	2	12	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	1/0	a0003	1247	47	17	10	7	8	4	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/1	a0004	1247	44	12	9	17	0	5	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0005	1247	29	3	9	11	0	6	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0006	1247	16	3	4	6	1	2	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0007	1247	7	1	1	4	1	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0008	1247	5	4	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0009	1247	5	0	0	5	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0010	1247	4	0	0	4	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0011	1247	4	3	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0012	1247	4	2	2	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0013	1247	4	0	0	4	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0014	1247	3	0	0	3	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0015	1247	3	2	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0016	1247	3	0	0	2	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0017	1247	3	3	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0018	1247	2	0	0	2	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0019	1247	2	0	0	2	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0020	1247	2	0	0	2	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0021	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0022	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0023	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0024	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0025	1247	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0026	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0027	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0028	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0029	1247	1	0	0	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0030	1247	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0031	1247	1	0	0	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0032	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0033	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0034	1247	1	0	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0035	1247	1	0	0	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0036	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0037	1247	1	0	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0038	1247	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	a0039	1247	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID2_chr14_51999809_52074059	0/1	a0001	1375	114	20	21	45	7	20	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0002	1375	103	8	18	67	1	9	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0003	1375	51	0	10	37	1	3	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0004	1375	22	15	5	0	1	1	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0005	1375	10	0	7	0	2	1	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0006	1375	9	9	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0007	1375	8	1	1	5	0	1	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0008	1375	6	1	4	0	1	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0009	1375	5	4	0	1	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0010	1375	4	4	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	1/0	a0011	1375	4	3	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0012	1375	3	0	3	0	0	0	copy fasta	NID2	chr14	51999809	52074059