JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NID2_chr14_51999809_52074059	0/0	a0013	1375	3	3	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0014	1375	2	2	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0015	1375	2	2	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0016	1375	2	2	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0017	1375	2	0	2	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0018	1375	2	2	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0019	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0020	1375	1	0	1	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0021	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0022	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0023	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0024	1375	1	0	0	0	0	1	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0025	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0026	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0027	1375	1	0	1	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0028	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0029	1375	1	0	0	0	1	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0030	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0031	1375	1	0	0	1	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0032	1375	1	0	1	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0033	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0034	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0035	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0036	1375	1	0	1	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0037	1375	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	a0038	1375	1	0	1	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NIF3L1_chr2_200884371_200908925	1/1	a0001	377	160	31	34	71	7	15	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	a0002	377	83	59	12	3	5	4	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	a0003	377	3	0	0	3	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	a0004	377	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	a0005	377	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	a0006	377	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	a0007	377	1	0	0	0	0	1	copy fasta	NIF3L1	chr2	200884371	200908925
NIFK_chr2_121721945_121741875	1/1	a0001	293	391	91	68	176	12	42	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	a0002	293	5	5	0	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	a0003	293	2	0	0	0	0	2	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	a0004	293	1	0	0	1	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	a0005	293	1	0	0	1	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIM1K_chr5_43187225_43285850	1/1	a0001	436	284	81	62	86	14	39	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	a0002	436	2	2	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	a0003	119	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	a0004	436	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	a0005	436	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	a0006	436	1	0	0	0	0	1	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	a0007	436	1	0	0	1	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	a0008	229	1	0	0	1	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NINJ1_chr9_93116496_93139251	0/1	a0001	152	276	60	40	126	14	35	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	1/0	a0002	152	87	30	12	33	2	9	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	a0003	152	3	2	1	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	a0004	152	1	0	1	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251