JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NINJ1_chr9_93116496_93139251	0/0	a0005	152	1	0	0	1	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ2_chr12_559296_668445	1/1	a0001	142	400	95	75	182	10	36	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	a0002	142	1	1	0	0	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	a0003	142	1	0	0	1	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	a0004	142	1	0	1	0	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	a0005	142	1	0	0	1	0	0	copy fasta	NINJ2	chr12	559296	668445
NINL_chr20_25447697_25590531	0/0	a0001	1380	101	9	16	64	2	10	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	1/0	a0002	1382	92	27	35	1	8	20	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0003	1382	31	8	2	21	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0004	1380	18	13	2	0	0	3	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/1	a0005	1380	18	6	7	0	2	2	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0006	1380	9	8	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0007	1380	7	7	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0008	1380	5	0	0	5	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0009	1380	3	1	2	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0010	1380	3	0	0	3	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0011	1380	2	0	0	2	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0012	1382	2	2	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0013	1380	2	0	0	2	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0014	1382	2	2	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0015	1380	2	2	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0016	1382	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0017	1380	1	0	0	0	0	1	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0018	1380	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0019	1380	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0020	1382	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0021	1382	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0022	1382	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0023	1380	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0024	1380	1	0	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0025	1380	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0026	1380	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0027	1382	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	a0028	1380	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NIN_chr14_50714763_50836162	0/1	a0001	2133	96	59	23	2	4	7	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	1/0	a0002	2133	64	9	10	26	4	14	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0003	2133	55	2	20	24	2	7	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0004	2133	25	2	8	13	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0005	2133	10	0	0	10	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0006	2133	6	6	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0007	2133	6	6	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0008	2133	5	2	3	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0009	2133	4	3	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0010	2133	3	0	2	0	1	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0011	2133	2	0	0	0	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0012	2133	2	2	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0013	2133	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0014	2133	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0015	2133	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0016	2133	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162