JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NIN_chr14_50714763_50836162	0/0	a0017	2133	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0018	2133	1	0	0	0	1	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0019	2133	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0020	2133	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0021	2133	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0022	2133	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0023	2133	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0024	2133	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0025	2133	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	a0026	2133	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIP7_chr16_69334772_69348106	1/1	a0001	180	398	95	73	166	18	44	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	a0002	180	1	0	1	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	a0003	180	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIPA1_chr15_22781644_22834789	1/1	a0001	329	269	58	53	103	12	41	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	a0002	328	127	32	23	61	4	7	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	a0003	328	2	0	0	2	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	a0004	329	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	a0005	328	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA2_chr15_22833666_22873384	0/0	a0000	0	85	6	10	54	5	10	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	1/1	a0001	360	345	85	61	154	11	32	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	a0002	360	1	0	1	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	a0003	360	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPAL1_chr4_48011772_48045173	1/1	a0001	410	324	80	55	137	13	37	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	a0002	410	85	13	17	43	3	9	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	a0003	410	3	0	0	3	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	a0004	410	1	0	0	1	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	a0005	410	1	1	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL2_chr8_98184826_98299235	1/1	a0001	383	305	81	66	111	13	32	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	a0002	383	24	0	1	23	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	a0003	383	2	0	1	0	1	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	a0004	383	1	1	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL3_chr1_24410802_24477976	1/1	a0001	406	377	87	68	162	16	42	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	a0002	406	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	a0003	196	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	a0004	406	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL4_chr5_157455213_157479722	0/1	a0001	404	190	37	38	93	7	14	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	1/0	a0002	404	160	36	38	60	7	18	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	a0003	404	37	19	8	0	2	8	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	a0004	404	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	a0005	404	1	1	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	a0006	404	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	a0007	404	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	a0008	404	1	1	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPBL_chr5_36871769_37071413	1/1	a0001	2804	274	72	46	123	11	20	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0002	2804	41	9	9	16	1	6	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0003	2804	4	4	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0004	2804	2	0	0	2	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0005	2804	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0006	2804	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0007	2804	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413