JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NKAIN3_chr8_62243854_62989904	0/0	a0002	218	33	11	4	11	2	5	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	a0003	218	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	a0004	218	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	a0005	218	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN4_chr20_63235784_63259463	0/0	a0001	208	149	38	31	57	4	19	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	1/1	a0002	208	122	35	27	25	10	23	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0003	208	69	8	11	42	2	6	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0004	208	4	0	0	4	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0005	208	4	4	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0006	208	2	2	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0007	208	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0008	208	1	0	1	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0009	208	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	a0010	208	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAPD1_chr11_112069299_112090150	1/1	a0001	293	378	98	73	171	6	28	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	a0002	293	2	0	0	2	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	a0003	293	1	0	0	1	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	a0004	293	1	0	1	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPL_chr6_28254297_28265958	0/0	a0001	402	133	3	28	71	9	22	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0002	402	104	15	9	73	1	6	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/1	a0003	402	83	28	14	26	5	9	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0004	402	52	8	9	32	0	3	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	1/0	a0005	402	26	19	5	0	1	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0006	402	6	0	4	2	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0007	402	5	4	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0008	402	5	5	0	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0009	402	2	1	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0010	402	1	0	0	1	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0011	402	1	0	0	1	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0012	402	1	1	0	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	a0013	402	1	0	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAP_chrX_119915672_119948751	1/1	a0001	415	283	58	47	139	9	28	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0002	414	29	22	5	0	0	2	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0003	130	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0004	115	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0005	115	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0006	132	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0007	206	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0008	284	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0009	415	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	a0010	415	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKD1_chr16_50543396_50654249	1/1	a0001	470	211	74	39	52	8	36	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	a0002	470	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD2_chr5_1003802_1043943	0/1	a0001	451	300	69	66	111	14	39	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	a0002	448	7	0	0	7	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	a0003	451	4	4	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	a0004	451	2	1	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	a0005	445	2	0	1	0	0	1	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	a0006	451	1	0	0	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	a0007	451	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943