JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NKD2_chr5_1003802_1043943	0/0	a0008	451	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	a0009	451	1	0	0	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKG7_chr19_51366620_51377654	1/1	a0001	165	423	89	83	187	18	44	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	a0002	165	4	4	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	a0003	165	4	4	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	a0004	165	1	0	1	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	a0005	165	1	0	0	1	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	a0006	165	1	1	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKIRAS1_chr3_23884951_23921990	1/1	a0001	192	395	88	84	164	13	44	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	a0002	192	2	0	0	0	0	2	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	a0003	192	1	0	0	0	1	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS2_chr17_42015090_42030641	1/1	a0001	191	328	92	56	138	12	28	copy fasta	NKIRAS2	chr17	42015090	42030641
NKPD1_chr19_45144744_45165982	1/1	a0001	832	338	70	61	151	14	40	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0002	832	29	5	5	13	1	5	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0003	832	25	10	2	13	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0004	832	11	9	2	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0005	832	8	0	4	0	1	3	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0006	832	5	0	0	5	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0007	832	2	0	2	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0008	832	2	2	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0009	832	2	2	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0010	832	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	a0011	832	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKTR_chr3_42595686_42653735	1/1	a0001	1462	257	48	53	116	10	28	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0002	1462	37	6	3	25	1	2	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0003	1462	33	23	5	1	0	4	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0004	1462	6	6	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0005	1462	5	5	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0006	1462	2	0	2	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0007	1462	2	0	0	2	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0008	1462	2	1	1	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0009	1462	1	1	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0010	1462	1	0	0	0	1	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0011	1462	1	0	1	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0012	1462	1	0	1	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0013	1462	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0014	1462	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0015	1462	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	a0016	1462	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKX1-1_chr4_1397932_1411442	0/0	a0001	448	272	69	54	108	7	34	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	1/1	a0002	448	93	22	15	34	7	13	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0003	448	8	1	0	7	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0004	448	2	0	1	0	0	1	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0005	448	1	1	0	0	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0006	448	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0007	448	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0008	448	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0009	448	1	1	0	0	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0010	448	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	a0011	448	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442