Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APPL2_chr12_105168300_105241174	0/0	a0009	664	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0010	664	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	a0011	664	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APRT_chr16_88804339_88816928	1/1	a0001	180	433	86	85	200	18	42	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	a0002	180	1	0	0	1	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	a0003	180	1	0	1	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	a0004	180	1	0	0	1	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	a0005	180	1	1	0	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	a0006	180	1	1	0	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APTX_chr9_32967616_33006628	1/1	a0001	342	382	88	63	177	10	42	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	a0002	342	3	3	0	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	a0003	342	2	1	1	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	a0004	342	1	0	0	1	0	0	copy fasta	APTX	chr9	32967616	33006628
AQP10_chr1_154316093_154330325	1/1	a0001	301	260	56	55	112	9	26	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	a0002	301	123	27	18	56	5	17	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	a0003	301	8	8	0	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	a0004	301	1	0	0	0	0	1	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	a0005	301	1	0	1	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	a0006	301	1	1	0	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP11_chr11_77584953_77615356	1/1	a0001	271	345	72	61	148	15	47	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	a0002	271	74	18	14	41	1	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	a0003	271	8	0	0	8	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	a0004	271	2	0	2	0	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	a0005	271	1	0	0	0	0	1	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	a0006	271	1	0	0	1	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	a0007	271	1	0	1	0	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP12A_chr2_240686866_240703483	1/0	a0001	295	59	6	3	37	3	9	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0002	295	34	4	13	16	0	1	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0003	295	19	3	7	0	6	3	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0004	295	16	0	4	4	3	5	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0005	295	12	1	2	3	1	5	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0006	295	12	8	0	3	1	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0007	295	5	1	4	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0008	295	2	2	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0009	295	2	0	2	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0010	295	2	2	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0011	295	2	0	2	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0012	295	1	0	0	0	0	1	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0013	295	1	1	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0014	258	1	1	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0015	295	1	1	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0016	295	1	0	1	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	a0017	295	1	0	0	1	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12B_chr2_240671418_240687885	1/0	a0001	307	62	5	5	42	2	7	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0002	307	47	2	16	22	1	6	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0003	307	31	12	10	1	5	3	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0004	307	9	0	1	1	2	5	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0005	307	9	1	3	0	2	3	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0006	174	4	2	0	2	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0007	307	3	2	0	0	0	1	copy fasta	AQP12B	chr2	240671418	240687885