JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NKX1-2_chr10_124440243_124455035	1/1	a0001	310	353	57	69	175	12	38	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0002	310	46	3	5	25	3	10	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0003	310	20	19	1	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0004	310	13	13	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0005	310	4	0	3	0	1	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0006	310	3	3	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0007	310	2	2	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0008	310	1	1	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0009	310	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0010	310	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0011	310	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	a0012	310	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX2-1_chr14_36511397_36525232	1/1	a0001	401	419	94	84	179	18	42	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	a0002	401	2	2	0	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	a0003	401	1	0	1	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	a0004	401	1	0	0	0	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	a0005	401	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	a0006	401	1	0	0	0	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	a0007	401	1	0	1	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-2_chr20_21506017_21519064	1/1	a0001	273	379	95	63	165	15	39	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	a0002	273	8	0	4	0	3	1	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	a0003	273	4	0	4	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	a0004	273	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	a0005	273	1	0	0	1	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	a0006	273	1	0	1	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-3_chr10_99527942_99541524	1/1	a0001	364	398	97	78	166	18	37	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	a0002	364	3	3	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	a0003	364	1	0	0	0	0	1	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	a0004	364	1	0	0	1	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	a0005	360	1	0	0	1	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-4_chr20_21390365_21402526	1/1	a0001	354	419	96	66	196	14	45	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	a0002	354	1	0	0	0	0	1	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-5_chr5_173227109_173240206	1/1	a0001	324	426	90	75	204	14	41	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	a0002	324	3	2	1	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	a0003	324	1	0	0	0	0	1	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-6_chr8_23696740_23711756	1/1	a0001	301	421	92	78	191	15	43	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	a0002	301	5	5	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	a0003	301	5	0	2	0	1	2	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	a0004	301	1	0	0	1	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	a0005	301	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	a0006	301	1	0	0	0	0	1	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-8_chr14_36575004_36587614	1/1	a0001	239	421	90	72	196	18	43	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	a0002	239	2	0	2	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	a0003	239	1	1	0	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	a0004	239	1	0	0	0	0	1	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	a0005	239	1	1	0	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	a0006	239	1	0	0	1	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	a0007	239	1	0	0	1	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX3-1_chr8_23673697_23687938	1/1	a0001	234	402	91	74	175	16	44	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	a0002	234	5	0	5	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938