JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NKX3-1_chr8_23673697_23687938	0/0	a0003	234	3	3	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	a0004	234	1	0	0	1	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	a0005	234	1	0	1	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-2_chr4_13535830_13549508	1/1	a0001	333	383	96	79	140	18	48	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	a0002	333	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	a0003	333	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	a0004	333	1	1	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	a0005	333	1	1	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	a0006	333	1	0	1	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	a0007	333	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	a0008	333	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX6-1_chr4_84486985_84504292	1/1	a0001	367	427	94	78	205	10	38	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	a0002	367	2	2	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	a0003	367	2	0	0	2	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	a0004	367	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	a0005	367	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	a0006	367	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	a0007	367	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	a0008	367	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-2_chr10_132778181_132791147	0/1	a0001	277	348	83	60	147	17	40	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	1/0	a0002	277	7	1	2	0	1	2	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	a0003	277	1	0	0	1	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-3_chr8_41640177_41655817	1/1	a0001	265	420	89	72	195	18	44	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0002	265	3	3	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0003	265	3	0	0	3	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0004	265	2	2	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0005	265	2	0	2	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0006	128	1	0	0	1	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0007	265	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0008	265	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	a0009	265	1	0	0	1	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NLE1_chr17_35123730_35147303	0/0	a0001	485	303	75	61	119	11	37	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/1	a0002	485	51	12	10	17	3	8	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	a0003	485	33	0	0	32	0	1	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	a0004	485	4	4	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	a0005	485	3	3	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	a0006	485	2	1	1	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	a0007	485	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	a0008	485	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	a0009	485	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	1/0	a0010	485	1	0	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLGN1_chr3_173392744_174299372	0/0	a0001	843	44	34	4	2	0	4	copy fasta	NLGN1	chr3	173392744	174299372
NLGN2_chr17_7402845_7424860	0/0	a0000	0	17	2	3	7	0	5	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	1/1	a0001	835	397	95	80	164	16	40	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	a0002	835	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	a0003	835	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	a0004	835	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	a0005	835	1	0	0	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN3_chrX_71139841_71176201	1/1	a0001	848	265	78	60	89	9	27	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	a0002	781	7	2	1	2	0	2	copy fasta	NLGN3	chrX	71139841	71176201