JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRC4_chr2_32219453_32269886	0/0	a0002	1010	3	2	1	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	a0003	1010	2	0	0	2	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	a0004	1010	1	0	1	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	a0005	1010	1	1	0	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	a0006	1010	1	1	0	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC5_chr16_56984557_57088520	0/0	a0001	1866	111	47	25	23	8	8	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0002	1866	99	1	12	76	0	10	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0003	1866	48	0	9	33	2	4	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0004	1866	45	2	16	14	3	10	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0005	1866	23	13	1	7	0	2	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0006	1866	10	1	2	7	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0007	1866	9	0	0	9	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0008	1866	7	5	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0009	1866	7	7	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0010	1866	7	7	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0011	1866	5	0	1	3	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0012	1866	5	5	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0013	1866	4	0	4	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0014	1866	4	0	1	0	2	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0015	1866	3	3	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	1/0	a0016	1866	3	0	1	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0017	1866	3	0	0	3	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0018	1866	2	0	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0019	1866	2	0	1	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0020	1866	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0021	1866	2	0	2	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0022	1866	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0023	1866	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0024	1866	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0025	1866	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0026	1866	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0027	1866	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0028	1866	1	0	1	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/1	a0029	1866	1	0	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0030	1866	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0031	1866	1	0	0	0	1	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0032	1866	1	0	1	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0033	1866	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0034	1866	1	0	1	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0035	1866	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0036	1866	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0037	1866	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0038	1866	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0039	1866	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0040	1866	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0041	1866	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0042	1866	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0043	1866	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	a0044	1866	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRP10_chr11_7952537_7970447	0/0	a0001	655	405	85	77	181	18	44	copy fasta	NLRP10	chr11	7952537	7970447