JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRP10_chr11_7952537_7970447	0/0	a0002	655	28	3	0	24	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	a0003	655	5	0	0	5	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	a0004	655	4	4	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	a0005	655	4	4	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/1	a0006	655	2	0	1	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	a0007	655	1	0	0	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	a0008	655	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	a0009	655	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP11_chr19_55780399_55836999	0/1	a0001	1033	303	75	42	144	10	31	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0002	1033	91	4	26	45	7	9	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0003	1033	16	1	0	14	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0004	1033	12	12	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	1/0	a0005	1033	5	0	3	0	1	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0006	1033	3	2	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0007	1033	2	2	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0008	1033	2	0	2	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0009	1033	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0010	1033	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0011	1033	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0012	1033	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0013	1033	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0014	1033	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0015	1033	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0016	1033	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0017	1033	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	a0018	1033	1	0	0	0	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP12_chr19_53788741_53829314	1/0	a0001	1061	297	54	49	145	10	38	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/1	a0002	1061	78	28	12	27	4	6	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0003	1061	9	0	4	1	3	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0004	1061	4	0	0	4	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0005	1061	4	4	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0006	1061	3	2	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0007	1061	3	0	0	3	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0008	1061	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0009	1061	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0010	1061	2	0	2	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0011	1061	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0012	1061	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0013	1061	1	0	0	0	1	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0014	1061	1	0	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0015	1061	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0016	1061	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0017	1061	1	0	0	0	0	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0018	1061	1	0	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0019	1061	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	a0020	1061	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP13_chr19_55890945_55937336	0/0	a0001	1043	231	56	32	112	9	22	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	1/1	a0002	1043	140	11	36	65	7	19	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0003	1043	39	11	9	14	2	3	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0004	1043	5	5	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336