JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRP13_chr19_55890945_55937336	0/0	a0005	1043	5	5	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0006	1043	3	2	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0007	1043	2	0	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0008	1043	2	2	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0009	1043	2	0	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0010	1043	2	0	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0011	1043	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0012	1043	1	0	0	0	0	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0013	1043	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0014	1043	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0015	1043	1	0	1	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0016	1043	1	0	0	0	0	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0017	1043	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0018	1043	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	a0019	1043	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP14_chr11_7015479_7076526	0/1	a0001	1093	122	24	29	47	8	13	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0002	1093	108	42	16	38	2	10	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0003	1093	38	0	3	27	2	6	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0004	1093	31	9	11	4	4	3	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	1/0	a0005	1093	8	5	2	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0006	107	6	0	1	5	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0007	1093	6	0	0	6	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0008	1093	4	0	0	4	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0009	1093	4	4	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0010	1093	3	0	0	3	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0011	1093	2	0	1	0	0	1	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0012	1093	2	2	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0013	1093	2	0	0	2	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0014	1093	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0015	1093	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0016	1093	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0017	1093	1	0	1	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0018	1093	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0019	1093	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0020	1093	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0021	1093	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0022	1093	1	0	0	0	0	1	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	a0023	1093	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP1_chr17_5509118_5589509	1/1	a0001	1473	228	34	47	115	9	21	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0002	1473	42	17	3	21	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0003	1473	21	0	0	16	0	5	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0004	1473	19	1	5	7	2	4	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0005	1473	15	10	3	0	1	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0006	1473	14	1	12	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0007	1473	12	0	0	12	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0008	1473	6	5	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0009	1473	5	0	1	0	2	2	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0010	1473	4	0	0	4	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0011	1473	4	4	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0012	1473	4	4	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509