JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRP1_chr17_5509118_5589509	0/0	a0013	1473	3	2	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0014	1473	2	0	0	0	0	2	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0015	1473	2	2	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0016	1473	2	2	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0017	1473	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0018	1473	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0019	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0020	1473	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0021	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0022	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0023	1473	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0024	1473	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0025	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0026	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0027	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0028	1473	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0029	1473	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0030	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0031	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0032	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0033	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0034	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0035	1473	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0036	1473	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	a0037	1473	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP2B_chrX_57672067_57685260	1/1	a0001	45	340	78	64	149	13	34	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2_chr19_54961374_55006138	0/0	a0001	1062	193	44	31	89	7	22	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0002	1062	83	17	21	30	2	13	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/1	a0003	1062	53	3	9	33	1	6	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0004	1062	30	7	6	12	3	2	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0005	1062	15	0	9	2	2	2	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0006	1062	11	5	1	5	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0007	1062	4	4	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0008	1062	4	0	0	4	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0009	1062	3	1	2	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0010	1062	3	1	2	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0011	1062	2	2	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0012	1062	2	1	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0013	1062	2	2	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0014	1062	2	0	0	2	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0015	1062	2	1	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0016	1062	2	1	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0017	1062	1	0	0	0	0	1	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0018	1062	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0019	1062	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0020	1062	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0021	1062	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0022	1062	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0023	1062	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0024	1062	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138