JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRP2_chr19_54961374_55006138	0/0	a0025	1062	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0026	1062	1	0	0	0	1	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0027	1062	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0028	1062	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0029	1062	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0030	1062	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0031	1062	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0032	1062	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0033	1062	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	a0034	1062	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP3_chr1_247411173_247453817	1/1	a0001	1034	423	94	80	189	18	40	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	a0002	1034	5	0	0	5	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	a0003	1034	5	0	2	1	0	2	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	a0004	1034	2	2	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	a0005	1034	2	0	0	2	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	a0006	1034	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	a0007	1034	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	a0008	1034	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP4_chr19_55831540_55886855	0/0	a0001	994	153	40	18	65	5	25	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	1/0	a0002	994	149	50	27	53	8	10	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/1	a0003	994	38	3	9	24	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0004	994	37	0	7	26	1	3	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0005	994	26	0	12	13	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0006	994	6	0	4	0	2	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0007	994	5	0	2	1	0	2	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0008	994	2	0	0	2	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0009	994	2	2	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0010	994	1	0	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0011	994	1	0	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0012	994	1	0	0	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0013	994	1	0	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0014	994	1	0	0	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	a0015	994	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP5_chr19_55994726_56066810	0/1	a0001	1200	141	21	50	42	6	21	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0002	1200	36	3	9	19	2	3	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0003	1200	30	17	3	5	1	4	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0004	1200	27	15	3	7	2	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	1/0	a0005	1200	25	2	0	20	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0006	1200	23	1	0	22	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0007	1200	21	7	4	8	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0008	1200	12	2	3	4	2	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0009	1200	11	6	0	5	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0010	1200	9	1	0	6	2	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0011	1200	7	0	0	6	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0012	1200	7	0	0	3	1	3	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0013	1200	4	0	0	4	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0014	1200	3	0	0	3	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0015	1200	3	0	0	3	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0016	1181	3	3	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0017	1200	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810