JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRP5_chr19_55994726_56066810	0/0	a0018	1200	2	0	0	0	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0019	1200	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0020	1200	2	1	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0021	1200	2	0	0	0	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0022	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0023	1200	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0024	1200	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0025	1200	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0026	1200	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0027	1200	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0028	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0029	1200	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0030	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0031	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0032	1200	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0033	1200	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0034	1200	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0035	1200	1	0	0	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0036	1200	1	0	0	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0037	1200	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0038	1200	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0039	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0040	1200	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0041	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0042	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0043	1200	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0044	1200	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	a0045	1181	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP6_chr11_273407_290388	0/0	a0001	891	189	45	52	51	9	32	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	1/0	a0002	891	176	4	7	149	2	13	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/1	a0003	891	32	4	17	0	5	5	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0004	891	12	11	1	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0005	891	7	5	2	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0006	891	4	4	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0007	891	3	2	1	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0008	891	3	3	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0009	891	3	3	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0010	890	3	3	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0011	891	3	2	1	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0012	891	2	2	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0013	891	2	2	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0014	891	1	1	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0015	891	1	0	1	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0016	891	1	1	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0017	890	1	1	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0018	891	1	1	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0019	891	1	0	0	1	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	a0020	891	1	0	0	1	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP7_chr19_54918515_54952530	0/0	a0001	1037	263	44	49	121	12	37	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0002	1037	72	9	14	38	2	9	copy fasta	NLRP7	chr19	54918515	54952530