JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRP7_chr19_54918515_54952530	0/0	a0003	1037	16	3	7	3	2	1	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0004	1037	14	14	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0005	1037	14	11	3	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0006	1037	4	0	0	4	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0007	1037	4	2	2	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/1	a0008	1037	4	3	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0009	1037	3	0	0	3	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0010	1037	3	3	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0011	1037	3	0	0	3	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0012	1037	2	2	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0013	1037	2	1	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0014	1037	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0015	1037	1	0	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0016	1037	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0017	1037	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0018	1037	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0019	1037	1	0	0	0	0	1	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0020	1037	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0021	1037	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0022	1037	1	0	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0023	1037	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0024	1037	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0025	1037	1	0	0	0	1	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0026	1037	1	0	0	0	1	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0027	1037	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	a0028	1037	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP8_chr19_55942832_55993629	0/1	a0000	0	254	60	56	90	14	33	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0001	1048	29	0	0	24	0	5	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0002	1048	14	13	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	1/0	a0003	1048	11	2	1	4	2	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0004	1048	8	0	0	8	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0005	1048	6	6	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0006	1048	6	0	6	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0007	1048	5	5	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0008	1048	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0009	1048	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0010	1048	3	1	0	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0011	1048	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0012	1048	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0013	1048	1	0	0	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0014	1048	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0015	1048	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0016	1048	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0017	1048	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	a0018	1048	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP9_chr19_55703438_55743402	1/1	a0001	991	2	0	0	0	0	0	copy fasta	NLRP9	chr19	55703438	55743402
NLRX1_chr11_119163725_119189016	0/0	a0001	975	240	44	27	129	5	35	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	1/1	a0002	975	94	12	32	30	10	8	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0003	975	16	12	3	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0004	975	8	8	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016