Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AQP12B_chr2_240671418_240687885	0/0	a0008	307	3	2	1	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0009	307	2	0	2	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0010	307	2	2	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0011	307	2	0	0	2	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0012	307	1	0	0	0	0	1	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0013	307	1	0	0	0	1	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0014	307	1	1	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0015	307	1	1	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	a0016	307	1	0	0	0	1	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP1_chr7_30906853_30930516	1/1	a0001	269	417	97	77	185	10	46	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	a0002	269	9	0	6	0	0	3	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	a0003	269	2	0	0	2	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	a0004	269	1	0	0	0	0	1	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	a0005	269	1	0	1	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	a0006	269	1	1	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	a0007	269	1	0	0	1	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP2_chr12_49945737_49963878	1/1	a0001	271	440	96	80	202	16	44	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	a0002	271	2	0	0	2	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP3_chr9_33436160_33452593	1/1	a0001	292	461	98	80	215	18	48	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	a0002	292	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP4_chr18_26847043_26870707	1/1	a0001	323	430	88	88	188	18	46	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	a0002	323	4	4	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	a0003	323	2	2	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	a0004	323	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	a0005	323	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP5_chr12_49956872_49970682	1/1	a0001	265	459	96	84	215	18	44	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	a0002	265	2	2	0	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	a0003	265	1	1	0	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	a0004	265	1	0	0	1	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	a0005	265	1	0	0	1	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	a0006	265	1	0	0	1	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	a0007	64	1	1	0	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP6_chr12_49967947_49982139	1/1	a0001	282	392	85	53	204	17	31	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	a0002	282	55	7	23	17	1	7	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	a0003	282	7	7	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	a0004	282	2	1	0	0	0	1	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	a0005	282	1	0	0	0	0	1	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	a0006	282	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP7B_chr2_94582311_94609628	1/1	a0001	346	359	84	76	147	14	36	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0002	346	8	8	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0003	346	4	0	0	4	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0004	346	3	0	0	3	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0005	346	3	0	0	1	0	2	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0006	346	2	0	0	2	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0007	346	1	0	0	1	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0008	346	1	1	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0009	288	1	0	0	1	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0010	346	1	0	0	1	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	a0011	346	1	1	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7_chr9_33378191_33407568	1/1	a0001	342	388	76	68	182	14	46	copy fasta	AQP7	chr9	33378191	33407568