JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLRX1_chr11_119163725_119189016	0/0	a0005	975	6	6	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0006	975	5	0	0	4	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0007	975	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0008	975	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0009	975	2	0	0	2	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0010	975	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0011	975	2	0	0	2	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0012	975	2	0	0	2	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0013	975	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0014	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0015	975	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0016	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0017	975	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0018	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0019	975	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0020	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0021	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0022	975	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0023	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0024	975	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0025	975	1	0	0	0	1	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0026	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0027	975	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	a0028	975	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NMBR_chr6_142069484_142152122	1/1	a0001	390	262	76	45	96	11	32	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	a0002	390	63	15	18	25	1	4	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	a0003	390	2	2	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	a0004	390	1	0	1	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	a0005	390	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	a0006	390	1	1	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMB_chr15_84650132_84663199	1/1	a0001	121	355	97	53	155	15	33	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/0	a0002	121	53	1	21	25	1	5	copy fasta	NMB	chr15	84650132	84663199
NMD3_chr3_161216311_161257307	1/1	a0001	503	391	83	68	185	12	41	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	a0002	503	2	2	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	a0003	503	2	2	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	a0004	503	1	0	0	0	0	1	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	a0005	503	1	1	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	a0006	503	1	0	0	1	0	0	copy fasta	NMD3	chr3	161216311	161257307
NME1_chr17_51148559_51167168	1/1	a0001	152	379	95	77	153	14	38	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	a0002	152	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	a0003	152	1	0	1	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	a0004	152	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	a0005	67	1	0	0	1	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	a0006	85	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME2_chr17_51161411_51176744	1/0	a0001	152	413	98	82	170	18	44	copy fasta	NME2	chr17	51161411	51176744
NME3_chr16_1765320_1776543	1/1	a0001	169	416	90	72	185	18	49	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	a0002	169	4	4	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	a0003	169	1	0	0	1	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	a0004	176	1	1	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	a0005	169	1	0	0	1	0	0	copy fasta	NME3	chr16	1765320	1776543