JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NME3_chr16_1765320_1776543	0/0	a0006	169	1	0	0	1	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	a0007	169	1	0	0	0	0	1	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	a0008	169	1	1	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME4_chr16_392199_405754	1/1	a0001	187	350	85	65	140	14	44	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	a0002	187	2	2	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	a0003	187	1	1	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	a0004	187	1	0	0	1	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	a0005	187	1	0	1	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	a0006	187	1	0	0	1	0	0	copy fasta	NME4	chr16	392199	405754
NME5_chr5_138110175_138144428	1/1	a0001	212	387	88	81	166	16	34	copy fasta	NME5	chr5	138110175	138144428
NME5_chr5_138110175_138144428	0/0	a0002	212	1	0	1	0	0	0	copy fasta	NME5	chr5	138110175	138144428
NME6_chr3_48287317_48306367	0/0	a0001	186	322	84	66	129	12	31	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	a0002	186	1	0	0	0	0	1	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	a0003	186	1	0	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367
NME7_chr1_169127531_169372797	1/1	a0001	376	298	80	60	109	12	35	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	a0002	376	2	2	0	0	0	0	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	a0003	376	1	0	0	0	0	1	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	a0004	376	1	0	0	1	0	0	copy fasta	NME7	chr1	169127531	169372797
NME8_chr7_37843597_37905397	0/0	a0001	588	158	34	28	68	7	21	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0002	588	74	5	5	54	1	9	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0003	588	51	38	3	8	1	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0004	588	32	1	11	15	1	4	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0005	588	30	0	8	18	3	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0006	588	12	0	4	5	1	2	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0007	588	8	1	1	6	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0008	588	6	0	2	0	2	2	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0009	588	3	1	0	1	0	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0010	588	2	1	1	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0011	588	2	1	1	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0012	588	2	2	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0013	588	2	0	2	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0014	588	1	1	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0015	545	1	0	0	1	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0016	264	1	0	0	1	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0017	151	1	0	0	0	0	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0018	588	1	0	0	1	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	a0019	588	1	1	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME9_chr3_138295999_138334851	1/1	a0001	330	266	86	49	85	12	32	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	a0002	330	5	5	0	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	a0003	330	3	1	2	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	a0004	330	1	0	0	1	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	a0005	330	1	0	1	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NMI_chr2_151265470_151294668	1/0	a0001	307	293	80	37	142	9	24	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/1	a0002	307	116	3	29	66	3	14	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	a0003	307	1	1	0	0	0	0	copy fasta	NMI	chr2	151265470	151294668
NMNAT1_chr1_9938475_9990498	1/1	a0001	279	308	87	52	117	6	44	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	a0002	279	4	0	0	4	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	a0003	279	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	a0004	279	1	0	0	1	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT2_chr1_183243237_183423380	1/1	a0001	307	258	84	54	72	16	30	copy fasta	NMNAT2	chr1	183243237	183423380